View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7247_low_7 (Length: 241)
Name: NF7247_low_7
Description: NF7247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7247_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 44885480 - 44885688
Alignment:
| Q |
15 |
acatcagagaatgataaaaggacaaaatccacattcttgctaacaagtgatttaatgcacatgttaatatgtaatttgcaggtaatagctgtggcagtag |
114 |
Q |
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| T |
44885480 |
acatcagagaatgataaaaggacaaaatccacattcttgctaacaagtgatttaatgcacatgttaatatgtaatttgcaggtaatagctgtggcagtag |
44885579 |
T |
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| Q |
115 |
caattggagttggtatacatgctatttatcatcttgcttgcgactttccacgccttcttcatgcaaatagtgaaaagtacaagctcatggaaccattttt |
214 |
Q |
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| T |
44885580 |
caattggagttggtatacatgctatttatcatcttgcttgcgactttccacgccttcttcatgcaaatagtgaaaagtacaagctcatggaaccattttt |
44885679 |
T |
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| Q |
215 |
tggaaagca |
223 |
Q |
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||||||||| |
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| T |
44885680 |
tggaaagca |
44885688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 90 - 223
Target Start/End: Original strand, 44915194 - 44915327
Alignment:
| Q |
90 |
ttgcaggtaatagctgtggcagtagcaattggagttggtatacatgctatttatcatcttgcttgcgactttccacgccttcttcatgcaaatagtgaaa |
189 |
Q |
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| T |
44915194 |
ttgcaggtgattgctgtggcagtagcaactggagttggtatacatgctatttatcatcttacttgcgactttcctcgccttcttcatgcaaatagtgaaa |
44915293 |
T |
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| Q |
190 |
agtacaagctcatggaaccattttttggaaagca |
223 |
Q |
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| T |
44915294 |
agtacaagctcatggaaccattttttggaaagca |
44915327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 44898933 - 44899072
Alignment:
| Q |
84 |
tgtaatttgcaggtaatagctgtggcagtagcaattggagttggtatacatgctatttatcatcttgcttgcgactttccacgccttcttcatgcaaata |
183 |
Q |
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|||| ||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| |||| || |||| |
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| T |
44898933 |
tgtattttgcagataatagctgttgcaatagcaattggagttggtatacatgctatttatcatcttgcttgtgactttcctagtcttattcacgcgaata |
44899032 |
T |
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| Q |
184 |
gtgaaaagtacaagctcatggaaccattttttggaaagca |
223 |
Q |
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| T |
44899033 |
gtgaaaagtacgagctcatggaaccattttttggaaagca |
44899072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 199
Target Start/End: Original strand, 39982835 - 39982945
Alignment:
| Q |
89 |
tttgcaggtaatagctgtggcagtagcaattggagttggtatacatgctatttatcatcttgcttgcgactttccacgccttcttcatgcaaatagtgaa |
188 |
Q |
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| T |
39982835 |
tttgcagatgatagctctggcaatagcaattggtgttggtatacatgctatttatcatcttgcttgtgattttcctcgcattcttcatgcaagcaatgaa |
39982934 |
T |
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| Q |
189 |
aagtacaagct |
199 |
Q |
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| T |
39982935 |
aagtacaagct |
39982945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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