View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7248_low_2 (Length: 244)
Name: NF7248_low_2
Description: NF7248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7248_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 18357795 - 18358028
Alignment:
| Q |
1 |
ataagaccctaagtaagtttcaccataacaatccaaactcatcatatatagaaatataaaaaatttcttctaatactaaaatggcttcctctcataaaat |
100 |
Q |
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| T |
18357795 |
ataaaaccctaagtaagtttcaccataacaatccaaactcgtcatatatagaaatataaaaaatttcttctaatactaaaatggcttcctctcataaaat |
18357894 |
T |
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| Q |
101 |
atttgttcttgttgctcttgctcttgtgttcattgcattgaactcatcaatatctatagtggagtctaggaaactgtctaaccctaattccaatatgagg |
200 |
Q |
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| T |
18357895 |
atttgttcttgttgctcttgctcttgtgttcattgcattgaactcatcaacgtctatagtggaatctaggaaactgtctaaccctaattccaatttgatg |
18357994 |
T |
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| Q |
201 |
agccttgaagcaagattaaaggtgagtgatgatg |
234 |
Q |
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| T |
18357995 |
agccttgaagcaagattgaaggtgagtggtgatg |
18358028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 18345972 - 18346200
Alignment:
| Q |
6 |
accctaagtaagtttcaccataacaatccaaactcatcatatatagaaatataaaaaatttcttctaatactaaaatggcttcctctcataaaatatttg |
105 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18345972 |
accctaagtaactttcaccataacaatccaaactcgtcatatatagatatataaaaaatttcttctaatactaaaatggcttcctctcataaaatatttg |
18346071 |
T |
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| Q |
106 |
ttcttgttgctcttgctcttgtgttcattgcattgaactcatcaatatctatagtggagtctaggaaactgtctaaccctaattccaatatgaggagcct |
205 |
Q |
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| T |
18346072 |
ttcttgttgctcttgctcttgtgttcattgcattgaactcatcaacgtctatagtggaatctaggaaactgtctaaccctaattccaatttgatgagcct |
18346171 |
T |
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| Q |
206 |
tgaagcaagattaaaggtgagtgatgatg |
234 |
Q |
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| T |
18346172 |
tgaagcaagattgaaggtgagtggtgatg |
18346200 |
T |
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