View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7248_low_4 (Length: 237)
Name: NF7248_low_4
Description: NF7248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7248_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26499352 - 26499135
Alignment:
| Q |
1 |
acaatgattccatgcattatttggacacacactcacttacatacgtatatcatttaattaaaatacacattatttaattcatttctttttgtatctttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26499352 |
acaatgattccatgcattatttggacacacactcac----atacgtatatcatttaattaaaatacacattatttaattcatttctttttgtatctttgt |
26499257 |
T |
|
| Q |
101 |
ttaaatataaaagtgagtctaaatattgtacccaaatcgttctgaccatccaaaattttctccatgtttgttttgagaggaaagaattcatccatttcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26499256 |
ttaaatataaaagtgagtctaaatattgtacccaaattgttctgaccatccaaaattttctccatgtttgttttgagaggaaagaattcatccatttcct |
26499157 |
T |
|
| Q |
201 |
gttaaaactctcttttgtaatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
26499156 |
gttaaaactctcttttgtaatt |
26499135 |
T |
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