View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7249_high_2 (Length: 359)
Name: NF7249_high_2
Description: NF7249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7249_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 31409263 - 31408934
Alignment:
| Q |
18 |
caaaccatccaattctctaattttctgtgctgatgcttgctttcaatctattgtgccacgtgtcgttcatgcatttttctggaaaattgtaatatcgaaa |
117 |
Q |
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| T |
31409263 |
caaaccatccaattctctaattttctgtgctgatgcttgcttccaatctattgtgccacgtgtcgttcatgcatttttctggaaaattgtaataacaaaa |
31409164 |
T |
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| Q |
118 |
aaatttctctctccaattttcaccaataaataacctacccatgccatcaccaaaaccacaccactgaactctcacacttcagttcattgtaataatttca |
217 |
Q |
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| T |
31409163 |
aagtttctctctccaattttcaccaataaataacctacctatgccatcaccaaaaccacaccactgaactctcacacttcagttcattgtaataatttca |
31409064 |
T |
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| Q |
218 |
cataaaaaatggcttcagcttccaccaccattacctcctccttcctctcaaccccttcttctctcacagagaaaccttcctcattcaaccaaaccctaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31409063 |
cataaaaaatggcttcagcttccaccaccattacctcctccttcctctcaaccccttcttctctcacagagaaaccttcctcattcaaccaaaccctaag |
31408964 |
T |
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| Q |
318 |
cctcggtttcaaaccaagacactccatctc |
347 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31408963 |
cctcggtttcaaaccaagacactccatctc |
31408934 |
T |
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