View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7249_high_3 (Length: 353)

Name: NF7249_high_3
Description: NF7249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7249_high_3
NF7249_high_3
[»] chr7 (2 HSPs)
chr7 (20-337)||(5897617-5897934)
chr7 (137-198)||(5897053-5897114)
[»] chr1 (4 HSPs)
chr1 (19-91)||(28108129-28108201)
chr1 (37-120)||(46916001-46916083)
chr1 (53-125)||(68997-69069)
chr1 (37-86)||(46518645-46518694)
[»] chr8 (2 HSPs)
chr8 (47-94)||(42456928-42456975)
chr8 (46-94)||(5920867-5920915)
[»] chr3 (2 HSPs)
chr3 (53-116)||(51380944-51381007)
chr3 (46-86)||(27844700-27844740)
[»] chr4 (1 HSPs)
chr4 (46-116)||(21512003-21512073)
[»] chr2 (4 HSPs)
chr2 (56-94)||(12037314-12037352)
chr2 (55-121)||(27249849-27249915)
chr2 (37-86)||(29923933-29923982)
chr2 (66-94)||(42013385-42013413)
[»] chr5 (2 HSPs)
chr5 (62-116)||(37283757-37283811)
chr5 (53-97)||(9379211-9379255)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 337
Target Start/End: Original strand, 5897617 - 5897934
Alignment:
Q  20 aaaaagacgtaaatgcacatcagcaattaattgccgatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacattatt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || ||||| ||||||||||    
T  5897617 aaaaagacgtaaatgcacatcagcaattaattgccgatgaagttatattgataaattactggtgtttcttagcatcgagtgaaatgtgaacaacattatt 5897716  T
Q  120 cctaaagagaaggtaattaagaaaacctgagcttggccttgtgcctgtccagcctgatagctcatctgttggggatccatctttgaaattataatgaaat 219  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5897717 cctaaagagaaggtaataaagaaaacctgagcttggccttgggcctgtccagcctgatagctcatctgttggggatccatctttgaaattgtaatgaaat 5897816  T
Q  220 gaatgaattgaatatcaagaataggtttgagatgaggattaaatgtctagcattttactcatatatttataagtgagttctaaaaagaattacattgctc 319  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5897817 gaatgaattgaatatcaagaacaggtttgagatgaggattaaatgtctagcattttactcatatatttataagtgagttctaaaaagaattacattgctc 5897916  T
Q  320 gagtttttagctaccaca 337  Q
    ||||||||||||||||||    
T  5897917 gagtttttagctaccaca 5897934  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 5897053 - 5897114
Alignment:
Q  137 taagaaaacctgagcttggccttgtgcctgtccagcctgatagctcatctgttggggatcca 198  Q
    |||||||||||||||||||||||| |||||||||| || ||||||||||||||||| |||||    
T  5897053 taagaaaacctgagcttggccttgggcctgtccagtctcatagctcatctgttgggaatcca 5897114  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 28108201 - 28108129
Alignment:
Q  19 aaaaaagacgtaaatgcacatcagcaattaattgccgatgaagttatattgataaattactggtgtttcctag 91  Q
    ||||||||||||||||  |||| | |  ||| ||||||||||||||||||| ||||||||| |||||||||||    
T  28108201 aaaaaagacgtaaatgttcatcggtagctaactgccgatgaagttatattggtaaattactagtgtttcctag 28108129  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 46916001 - 46916083
Alignment:
Q  37 catcagcaattaattgccgatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacattattc 120  Q
    |||| ||| |||| |||||||||| | |||||| |||||||||||||||||||| |||||| | || ||||| |||||||||||    
T  46916001 catctgcagttaactgccgatgaaat-atattggtaaattactggtgtttcctatcatcgagtgaaatgtgaacaacattattc 46916083  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 68997 - 69069
Alignment:
Q  53 ccgatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacattattcctaaa 125  Q
    ||||||| ||||||||||||||||||| |||| ||||||||| || | || ||||| ||||||| ||| ||||    
T  68997 ccgatgatgttatattgataaattactagtgtgtcctagcattgagtgaagtgtgaacaacattcttcataaa 69069  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 46518694 - 46518645
Alignment:
Q  37 catcagcaattaattgccgatgaagttatattgataaattactggtgttt 86  Q
    |||||||| |||| |||||||| | |||||||| ||||||||||||||||    
T  46518694 catcagcagttaaatgccgatggaattatattggtaaattactggtgttt 46518645  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 42456928 - 42456975
Alignment:
Q  47 taattgccgatgaagttatattgataaattactggtgtttcctagcat 94  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  42456928 taattaccgatgaggttatattggtaaattactggtgtttcctagcat 42456975  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 5920867 - 5920915
Alignment:
Q  46 ttaattgccgatgaagttatattgataaattactggtgtttcctagcat 94  Q
    |||| |||||||||  |||||||| |||| |||||||||||||||||||    
T  5920867 ttaactgccgatgagattatattggtaaagtactggtgtttcctagcat 5920915  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 51381007 - 51380944
Alignment:
Q  53 ccgatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacatt 116  Q
    ||||||| ||||||||||||||||||| |||||||||||||| || | || ||||| |||||||    
T  51381007 ccgatgatgttatattgataaattactagtgtttcctagcattgagtgaagtgtgaacaacatt 51380944  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 27844700 - 27844740
Alignment:
Q  46 ttaattgccgatgaagttatattgataaattactggtgttt 86  Q
    |||| |||||||||| ||||||||||||||||||| |||||    
T  27844700 ttaactgccgatgaaattatattgataaattactgatgttt 27844740  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 21512073 - 21512003
Alignment:
Q  46 ttaattgccgatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacatt 116  Q
    |||| ||||||| ||||||||||||||||||| | |||||||||||||| || | || ||||| |||||||    
T  21512073 ttaactgccgataaagttatattgataaattagtagtgtttcctagcattgagtgaagtgtgaacaacatt 21512003  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 12037352 - 12037314
Alignment:
Q  56 atgaagttatattgataaattactggtgtttcctagcat 94  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  12037352 atgaggttatattgataaattactggtgtttcctagcat 12037314  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 27249849 - 27249915
Alignment:
Q  55 gatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacattattcc 121  Q
    ||||||||||||||||||||||||| |||||||||| ||| || | || ||||| ||||||| ||||    
T  27249849 gatgaagttatattgataaattactagtgtttcctaacattgagtgaagtgtgaacaacattcttcc 27249915  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 29923933 - 29923982
Alignment:
Q  37 catcagcaattaattgccgatgaagttatattgataaattactggtgttt 86  Q
    ||||||||||||| ||||||||| ||||||||  ||||||||||||||||    
T  29923933 catcagcaattaactgccgatgaggttatattagtaaattactggtgttt 29923982  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 94
Target Start/End: Complemental strand, 42013413 - 42013385
Alignment:
Q  66 attgataaattactggtgtttcctagcat 94  Q
    |||||||||||||||||||||||||||||    
T  42013413 attgataaattactggtgtttcctagcat 42013385  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 37283757 - 37283811
Alignment:
Q  62 ttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacatt 116  Q
    |||||||||||||||||| |||||||||||||| || | || ||||| |||||||    
T  37283757 ttatattgataaattactcgtgtttcctagcattgagtgaagtgtgaacaacatt 37283811  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 9379255 - 9379211
Alignment:
Q  53 ccgatgaagttatattgataaattactggtgtttcctagcatcga 97  Q
    ||||||||||||||||||||||||||||  |||| | ||||||||    
T  9379255 ccgatgaagttatattgataaattactgtagttttcaagcatcga 9379211  T

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