View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7249_high_8 (Length: 213)
Name: NF7249_high_8
Description: NF7249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7249_high_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 23883654 - 23883454
Alignment:
| Q |
13 |
aatatcgacgccacaatttccacaaccgatctactatgttgcaaaacatcagacattaaagcactccacaatttcccaatcccactccacttaatgtctg |
112 |
Q |
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| T |
23883654 |
aatatcgacgccacaatttccacaactgatctactatgttgcaaaacatcagacattaaagcactccacaattttccaatcccacttcacttaatgtctg |
23883555 |
T |
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| Q |
113 |
atgttttgcactatactcttacctgccacagtccctcatttactatctgaaagcgtagaaccattacttgcgagtgaaaatgaagctcgatcttatggaa |
212 |
Q |
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| T |
23883554 |
atgttttgcactatactcttacctgccacagtccctcatttactatctgaaagcgtaaaaccactacttgcgagtgaaaatgaagctcgatcttatggaa |
23883455 |
T |
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| Q |
213 |
a |
213 |
Q |
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| T |
23883454 |
a |
23883454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 85 - 213
Target Start/End: Original strand, 23419728 - 23419855
Alignment:
| Q |
85 |
ttcccaatcccactccacttaatgtctgatgttttgcactatactcttacctgccaca--gtccctcatttactatctgaaagcgtagaaccattacttg |
182 |
Q |
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|||||||||| ||||| ||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| | |||||||||||||| ||| | |
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| T |
23419728 |
ttcccaatcctgctccatttaatgtctaatgttttgcactatactccgacctgccacaccgtccctcatttactagccgaaagcgtagaacc---actag |
23419824 |
T |
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| Q |
183 |
cgagtgaaaatgaagctcgatcttatggaaa |
213 |
Q |
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| | | ||||||||||||||||||||||||| |
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| T |
23419825 |
caactcaaaatgaagctcgatcttatggaaa |
23419855 |
T |
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