View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7250_high_1 (Length: 1086)
Name: NF7250_high_1
Description: NF7250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7250_high_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 924; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 924; E-Value: 0
Query Start/End: Original strand, 17 - 1074
Target Start/End: Original strand, 7901027 - 7902084
Alignment:
| Q |
17 |
caataccttcaaaaaatttatcattattttacaaagtatacaactcattaaggaactaccaaattaacctagctcactttttatccttcatgcaacaaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901027 |
caataccttcaaaaaatttatcattattttacaaagtatacaactcattaaggaactaccaaattaacctagctcactttttatccttcatgcaacaaac |
7901126 |
T |
|
| Q |
117 |
tgatagatcattttaccttctcattacaagtattcaannnnnnnnnnnnnnnnnn--gtatatatatgtgcaccacaatgtatctgtactcacaagattc |
214 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901127 |
tgatagatcatttcaccttctcaatacaagtattcaaacacacacacacacacacacgtatatatatgtgcaccacaatgtatctgtactcacaagattc |
7901226 |
T |
|
| Q |
215 |
aaaataagtaaaaagaagttaaacatcaagcagaacataatggcaagcttgggaagtttcatgtctgtattaaactttctcttatttctctttgttggtt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901227 |
aaaataagtaaaaagaagttaaacatcaagcagaacataatggcaagcttgggaagtttcatgtctgtattaaactttctcttatttctctttgttggtt |
7901326 |
T |
|
| Q |
315 |
taatctcttcatctgaagctgccataaagaaataccagtttgatgtgagttattatatttcgatcatattcataccttaaccactatagctagcaatgca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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|
| T |
7901327 |
taatctcttcatctgaagctgccataaagaaataccagtttgatgtgagttattatattttgatcatattcataccttaactactatagctagcaatgca |
7901426 |
T |
|
| Q |
415 |
tggttcccttaatagcatttcgttctttctacagattcaagtgaagaatgtgagtagactgtgccatgcaaaacccattgtaactgtaaatgggaggttt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901427 |
tggttcccttaatagcatttcgttctttctacagattcaagtgaagaatgtgagtagactgtgccatgcaaaacccattgtaactgtaaatgggaggttt |
7901526 |
T |
|
| Q |
515 |
ccagggccaactatctatgctagggaaggagatcaagtgtttgtcaacgttaccaaccatgcacaatacaacatgtcgattcattggtagctgaatttca |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7901527 |
ccagggccaactatctatgctagggaaggagatcaagtgtttgtcaacgttaccaaccatgcacaatacaacatgtcgattcattggtagctgaatttca |
7901626 |
T |
|
| Q |
615 |
cgaatcaattaaatacatataggtgaagtttttaacactagaaaatacatgtttttctctaacaatcgtatacatgcttgttataggcatggacttaaac |
714 |
Q |
| |
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| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7901627 |
caaatcaattaaatac--ataggtgaagtttttaacactagaaaatacatgtttttctctaacaatcgtatatatgcttgttataggcatggacttaaac |
7901724 |
T |
|
| Q |
715 |
aatatcgtaatggttgggcggatggaccggcttacatcacacagtgtccgatacagaccggaaacagctatacttacgaattcaacgttactgggcaaag |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7901725 |
aatatcgtaatggttgggcggatggaccggcttacatcacacagtgtccgatacagaccggaaacagctatacttacgaattcaacgttactgggcaaag |
7901824 |
T |
|
| Q |
815 |
aggaacactatggtggcatgcacacattttctggcttagggccactgtctacggggcaatagtaattatgcctaaacttggaacaccgtttcctttccca |
914 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
7901825 |
aggaacactatggtggcatgcacacattttctggcttagggccactgtctacggggcaatagtaattatgcctaaacttggaacaccatttcctttccca |
7901924 |
T |
|
| Q |
915 |
cagccagctagagaattcgaaattgtcttaggtaagtattataaagattcatttttccnnnnnnnngtattataaagattcatcggatgaaataagaagt |
1014 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
7901925 |
cagccagctagagaattcgaaattgtcttaggtaagtattataaagattcatttttccaaaaaaaagtattataaagattcatgggatgaaataagaagt |
7902024 |
T |
|
| Q |
1015 |
atgaaagttgatgtactaattgtttctgcatccaataggtgaatggtggaacaatgatgt |
1074 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
7902025 |
atgaaagttgatgtactaattgtttctgcatgcaataggtgaatggtggaacaatgatgt |
7902084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 446 - 547
Target Start/End: Original strand, 7891022 - 7891123
Alignment:
| Q |
446 |
cagattcaagtgaagaatgtgagtagactgtgccatgcaaaacccattgtaactgtaaatgggaggtttccagggccaactatctatgctagggaaggag |
545 |
Q |
| |
|
||||||||| |||||||||||||||| || |||||||||||||| |||||||| ||||||||||||| |||||||||||| || ||||||| ||||||| |
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|
| T |
7891022 |
cagattcaaatgaagaatgtgagtaggctatgccatgcaaaaccaattgtaacagtaaatgggaggtatccagggccaacaatttatgctacagaaggag |
7891121 |
T |
|
| Q |
546 |
at |
547 |
Q |
| |
|
|| |
|
|
| T |
7891122 |
at |
7891123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 699 - 940
Target Start/End: Original strand, 7891303 - 7891544
Alignment:
| Q |
699 |
aggcatggacttaaacaatatcgtaatggttgggcggatggaccggcttacatcacacagtgtccgatacagaccggaaacagctatacttacgaattca |
798 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| |||||||| ||||| || || || ||||| || || || || ||||| || || || |||| |
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|
| T |
7891303 |
aggcatggacttaaacagtatcgcaatggttgggctgatggaccagcttatattactcaatgtccaattcaaactggtggaagctacacatatgacttca |
7891402 |
T |
|
| Q |
799 |
acgttactgggcaaagaggaacactatggtggcatgcacacattttctggcttagggccactgtctacggggcaatagtaattatgcctaaacttggaac |
898 |
Q |
| |
|
| || || || ||||||||||| | ||||||||||| || ||| | ||| | ||||| ||||| || || ||||| || || |||||||||| ||||| |
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|
| T |
7891403 |
atgtgacaggacaaagaggaactttgtggtggcatgctcatattctttggttaagggctactgtttatggtgcaattgttatcatgcctaaaccaggaac |
7891502 |
T |
|
| Q |
899 |
accgtttcctttcccacagccagctagagaattcgaaattgt |
940 |
Q |
| |
|
|| |||||||| ||||| |||||||||||||| |||||||| |
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|
| T |
7891503 |
cccttttccttttccacaaccagctagagaatttgaaattgt |
7891544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 226 - 585
Target Start/End: Original strand, 31213273 - 31213637
Alignment:
| Q |
226 |
aaagaagttaaacatcaagcagaacataatggcaagcttgggaagtttcatgtctgtattaaactttctcttatttctctttgttggtttaatctcttca |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| |
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|
| T |
31213273 |
aaagaagttaaacatcaagcagaacataatggcaagcttgggaagtttcacgtctgtattaaactttctgttatttctctttgttggtttattctcttca |
31213372 |
T |
|
| Q |
326 |
tctgaagctgccataaagaaataccagtttgatgtgagttattatatttcgatcatattca---taccttaacc-actatagctagcaatgcatggttcc |
421 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||| ||| ||||||| | ||||||| |||||||||||||||||| |||||| |
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|
| T |
31213373 |
tctgaagctgccataaggaaataccagtttgatgtgagttataatattttgataatattcagcatgccttaactgactatagctagcaatgcaaggttcc |
31213472 |
T |
|
| Q |
422 |
cttaatagcatttc-gttctttctacagattcaagtgaagaatgtgagtagactgtgccatgcaaaacccattgtaactgtaaatgggaggtttccaggg |
520 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
31213473 |
cttaatagcatttttgttctttctacagattcaagataagaatgtgagtagattgtgccatgcaaaacccattgtaacggtaaatgggaggtttccaggg |
31213572 |
T |
|
| Q |
521 |
ccaactatctatgctagggaaggagatcaagtgtttgtcaacgttaccaaccatgcacaatacaa |
585 |
Q |
| |
|
||||||||| |||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31213573 |
ccaactatcaatgccagggagggagatcaagtgcttgtcaacgttaccaaccatgcacaatacaa |
31213637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 688 - 1074
Target Start/End: Original strand, 31213675 - 31214063
Alignment:
| Q |
688 |
atgcttgttataggcatggacttaaacaatatcgtaatggttgggcggatggaccggcttacatcacacagtgtccgatacagaccggaaacagctatac |
787 |
Q |
| |
|
|||||| | |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213675 |
atgcttatcataggcatggacttaaacaataatgtaatggtttggcggatggaccggcttacatcacacagtgtccgatacagaccggaaacagctatac |
31213774 |
T |
|
| Q |
788 |
ttacgaattcaacgttactgggcaaagagg---aacactatggtggcatgcacacattttctggcttagggccactgtctacggggcaatagtaattatg |
884 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |
|
|
| T |
31213775 |
ttacaaattcaacgttactgggaaaagaggaacaacactatggtggcatgcacacattttctggctgagggccactgtctatggggcaatagtaatcatg |
31213874 |
T |
|
| Q |
885 |
cctaaacttggaacaccgtttcctttcccacagccagctagagaattcgaaattgtcttaggtaagtattataaagattcatttttcc----nnnnnnnn |
980 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213875 |
cctaaacttggaatacc-tttcctttcccacagccagctagagaagtcaaaattgtcttaggtaagtattataaagattcatttttccaaaaaaaaaaaa |
31213973 |
T |
|
| Q |
981 |
gtattataaagattcatcggatgaaataagaagtatgaaagttgatgtactaattgtttctgcatccaataggtgaatggtggaacaatgatgt |
1074 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31213974 |
gtattataaagattcatcgg----aataagaagtatgaaagttgatatactaattgtttctgcatgcaataggtgaatggtggaacaatgatgt |
31214063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 626 - 667
Target Start/End: Original strand, 31213631 - 31213672
Alignment:
| Q |
626 |
aatacatataggtgaagtttttaacactagaaaatacatgtt |
667 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213631 |
aatacaaataggtgaagtttttaacactagaaaatacatgtt |
31213672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 695 - 731
Target Start/End: Complemental strand, 55603227 - 55603191
Alignment:
| Q |
695 |
ttataggcatggacttaaacaatatcgtaatggttgg |
731 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
55603227 |
ttataggcatggacttaaacaatatcgcaatggttgg |
55603191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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