View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7250_low_2 (Length: 631)
Name: NF7250_low_2
Description: NF7250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7250_low_2 |
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| [»] chr5 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 601; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 7 - 631
Target Start/End: Complemental strand, 7902717 - 7902093
Alignment:
| Q |
7 |
agcagaacctgtgtcattgctagctggcaactgtggaaggatgggttggacagtgtttgggatgtctttgtattgaagtatagctgtagcagttttgttg |
106 |
Q |
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| T |
7902717 |
agcaaaacctgtgtcattgctagctggcaactgtggaaggatgggttggacagtgtttgggatgtctttgtattgaagtatagctgtagcagttttgttg |
7902618 |
T |
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| Q |
107 |
tcaacttgaattggggcatccataaaagccttggtggccacaaagtacctaccagcaacttgattggcatgaaccagaacgtttgtggtttgaccaggag |
206 |
Q |
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| T |
7902617 |
tcaacttgaattggggcatccataaaagccttggtggccacaaagtacctaccagcaacttgattggcatgaaccagaacgtttgtggtttgaccaggag |
7902518 |
T |
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| Q |
207 |
caattagtatagcctgagtggtgaatggttttgtataaacagcatcaacctccactactgtcatgttgtgacccgcaatggcaaagaaaagctcatcgtt |
306 |
Q |
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| T |
7902517 |
caattagtatagcctgagtggtgaatggttttgtataaacagcatcaacctccactactgtcatgttgtgacccgcaatggcaaagaaaagctcatcgtt |
7902418 |
T |
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| Q |
307 |
gagggcagcgttgacgattctcatgaggtatgtcttcccttgttctacctccattgcaaatgtgtctagaaaattgaagcaaattaattgaacttcaaat |
406 |
Q |
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| T |
7902417 |
gagggcagcgttgacgattctcatgaggtatgtcttcccttgttctacctccattgcaaatgtgtctagaaaattgaagcaaattaattgaacttcaaat |
7902318 |
T |
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| Q |
407 |
aaagattttattctcttgtaaatataattaaatattttgtatttgtacaaattgtattcagcctgttaattagatctacggtatagcatagtctatttaa |
506 |
Q |
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| T |
7902317 |
aaagaatttattctcttgtaactataattaaatattttgtatttgtacaaattgtattcagcctgttaattagatctacggtatagcatagtctatttaa |
7902218 |
T |
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| Q |
507 |
aactgtgctcgactaatttttcttacgcttctcagaacaaggaaatagtggtcctgtttttccattgatcgtatgtgcatctgacacatttggtggcaac |
606 |
Q |
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| T |
7902217 |
aactgtgctcgactaatttttcttacgcttctcagaacaaggaaatagtggtcctggttttccattgatcgtatgtgcatctgacatatttggtggcaac |
7902118 |
T |
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| Q |
607 |
cccaatttgtttccttgcttttcaa |
631 |
Q |
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| T |
7902117 |
cccaatttgttcccttgcttttcaa |
7902093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 182 - 379
Target Start/End: Complemental strand, 7892269 - 7892072
Alignment:
| Q |
182 |
agaacgtttgtggtttgaccaggagcaattagtatagcctgagtggtgaatggttttgtataaacagcatcaacctccactactgtcatgttgtgacccg |
281 |
Q |
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| T |
7892269 |
agaacatttgtggtttgaccaggaccaattagaatggattgtgttgtgaatggttttgtgtaaactgcatcaacttcaactactgtcatgttgtgaccag |
7892170 |
T |
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| Q |
282 |
caatggcaaagaaaagctcatcgttgagggcagcgttgacgattctcatgaggtatgtcttcccttgttctacctccattgcaaatgtgtctagaaaa |
379 |
Q |
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| T |
7892169 |
caagggaaaagaaaagctcatcattaagggctgcattgatgattcttagcagatatgtcttgcccttctcaacctccattgcatatgtatctagaaaa |
7892072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 526 - 623
Target Start/End: Complemental strand, 7891880 - 7891783
Alignment:
| Q |
526 |
ttcttacgcttctcagaacaaggaaatagtggtcctgtttttccattgatcgtatgtgcatctgacacatttggtggcaaccccaatttgtttccttg |
623 |
Q |
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| T |
7891880 |
ttcttacgtttctcggaacaaggaaagagtggtcctggcttcccattgatcgtatgtgcatccgacatatttggtggcaaccccatttggttcccttg |
7891783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 538 - 631
Target Start/End: Complemental strand, 31214165 - 31214072
Alignment:
| Q |
538 |
tcagaacaaggaaatagtggtcctgtttttccattgatcgtatgtgcatctgacacatttggtggcaaccccaatttgtttccttgcttttcaa |
631 |
Q |
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| T |
31214165 |
tcagaacaaggaaatagcggtcctggttttccattgatcgtatgtgcatctgacatatttggtgacaaccccatattgtttccttgattttcaa |
31214072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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