View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7250_low_3 (Length: 443)
Name: NF7250_low_3
Description: NF7250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7250_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Original strand, 11818472 - 11818884
Alignment:
| Q |
18 |
attaaaggaaatatttttcatttccttcaaaaattcaattgagtgactcatgctagaaagttcctccaaagaattgatcacaatgtcttcaatacgtggt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11818472 |
attaaaggaaatatttttcatttccttcaaaaattcaattgagtgactcatgctagaaagttcctccaaagaattgatcacaatgtcttcaatacgtggt |
11818571 |
T |
|
| Q |
118 |
atgtacatttctaatgtattatggcccatggtaagagaagagattaagcgtctaaaacgcatgtgttcttttcgagagaaactccaaactggtttacatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11818572 |
atgtacatttctaatgtattatggcccatggtaagagaagagattaagcgtctaaaacgcatgtgttcttttcgagagaaactccaaactggtttacatc |
11818671 |
T |
|
| Q |
218 |
tcatcacttctttggtagattttggataaccaatcttaaaggtctcatcatttgtcaacacttgcctacacatgtcagcctcacaaacgatgatgcttgg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11818672 |
tcatcacttctttggtagattttggataaccaatcttaaaggtctcatcatttgtcaacacttgcctacacatgtcagcctcacaaacgatgatgcttgg |
11818771 |
T |
|
| Q |
318 |
actcccgaataagtgtgtcttgtagatacctattcgtccatacctaattaaaacaaaaggtagcgagtgagtatagataatataaacatatgcttgtgtt |
417 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||||| |
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| T |
11818772 |
actcccgaataaatgtgtcttgtagatacctattcgtccatacc----taaaacaaaagctagcgagtgagtatagaaactataaacatatgcttgtgtt |
11818867 |
T |
|
| Q |
418 |
tgtgcgcgggcgtgtgt |
434 |
Q |
| |
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|||||||| || ||||| |
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| T |
11818868 |
tgtgcgcgcgcatgtgt |
11818884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 21 - 403
Target Start/End: Original strand, 11804484 - 11804863
Alignment:
| Q |
21 |
aaaggaaatatttttcatttccttcaaaaattcaattgagtgactcatgctagaaagttcctccaaagaattgatcacaatgtcttcaatacgtggtatg |
120 |
Q |
| |
|
||||||||| | ||||| || |||||||| || | || |||| |||| ||||||| |||||||| ||||||||| |||||||| ||||||||||||| | |
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| T |
11804484 |
aaaggaaatgctcttcatctctttcaaaaactccactgggtgattcatactagaaatttcctccatagaattgattacaatgtcctcaatacgtggtagg |
11804583 |
T |
|
| Q |
121 |
tacatttctaatgtattatggcccatggtaagagaagagattaagcgtctaaaacgcatgtgttctttt-cgagagaaactccaaactggtttacatctc |
219 |
Q |
| |
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||||||||||||||||| || ||||||||||| | ||||| || ||| | |||| | ||||||||| | | |||| ||||||| | |||| ||| |
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| T |
11804584 |
tacatttctaatgtattgtgacccatggtaagggcagagactagacgttttaaacctttatgttctttttcaacagaa-ctccaaaaagatttaaatcca |
11804682 |
T |
|
| Q |
220 |
atcacttctttggtagattttggataaccaatcttaaaggtctcatcatttgtcaacacttgcctacacatgtcagcctcacaaacgatgatgcttggac |
319 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||| ||||||| || | ||| || ||| ||||||||||||||||||| |||||||||||||| |
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| T |
11804683 |
atcacttccatggtggattttggataaccaatcttaaacgtctcataatctaacaagacacgccggcacatgtcagcctcacaaatgatgatgcttggac |
11804782 |
T |
|
| Q |
320 |
tcccgaataagtgtgtcttgtagatacctattcgtccatacctaattaaaacaaaaggtagcgagtgagtatagataatataaa |
403 |
Q |
| |
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||||||||||||| |||||||||||||| | ||||||| |||| ||||| |||| || |||||||||||||| |||||||| |
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|
| T |
11804783 |
tcccgaataagtgcgtcttgtagataccagtccgtccattccta---aaaaccaaagataacgagtgagtatagaaaatataaa |
11804863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 21 - 364
Target Start/End: Original strand, 11826783 - 11827126
Alignment:
| Q |
21 |
aaaggaaatatttttcatttccttcaaaaattcaattgagtgactcatgctagaaagttcctccaaagaattgatcacaatgtcttcaatacgtggtatg |
120 |
Q |
| |
|
|||||||||||| ||||| || |||||||| || | | |||| |||| ||||||| ||||||||||||||| ||||||||||| || |||| | || | |
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| T |
11826783 |
aaaggaaatattcttcatctctttcaaaaactccacttggtgattcatactagaaatttcctccaaagaatttatcacaatgtcctccatacaagttagg |
11826882 |
T |
|
| Q |
121 |
tacatttctaatgtattatggcccatggtaagagaagagattaagcgtctaaaacgcatgtgttcttttcgagagaaactccaaactggtttacatctca |
220 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| |||||||||||| | | |||| ||||||||| | |||| | ||||||| ||||||||| |
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| T |
11826883 |
tacatttctaaagtattgtggcccatggtaagaactgagattaagcgtttcacacgcttgtgttcttcttgagatgatctccaaaagaatttacatctag |
11826982 |
T |
|
| Q |
221 |
tcacttctttggtagattttggataaccaatcttaaaggtctcatcatttgtcaacacttgcctacacatgtcagcctcacaaacgatgatgcttggact |
320 |
Q |
| |
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||||||| | || ||||||||||||||||||||||| |||||||||||||| | | |||||||||||| |||| ||||| | ||||||||||||||| |
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| T |
11826983 |
tcacttccatagtggattttggataaccaatcttaaaagtctcatcatttgttaggatttgcctacacatatcagaatcacagatgatgatgcttggact |
11827082 |
T |
|
| Q |
321 |
cccgaataagtgtgtcttgtagatacctattcgtccatacctaa |
364 |
Q |
| |
|
||| || ||||| | |||||||||||| ||| ||||||||||| |
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|
| T |
11827083 |
cccaaacaagtgcgacttgtagataccagttcttccatacctaa |
11827126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 60 - 152
Target Start/End: Complemental strand, 20573547 - 20573455
Alignment:
| Q |
60 |
gtgactcatgctagaaagttcctccaaagaattgatcacaatgtcttcaatacgtggtatgtacatttctaatgtattatggcccatggtaag |
152 |
Q |
| |
|
|||| |||| ||||||| || |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
20573547 |
gtgattcatactagaaattttctccaaagaattgatcacaatgtcctcaatacgtggtaggtacatttctaatgtattgtgacccatggtaag |
20573455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 60 - 257
Target Start/End: Original strand, 17513519 - 17513716
Alignment:
| Q |
60 |
gtgactcatgctagaaagttcctccaaagaattgatcacaatgtcttcaatacgtggtatgtacatttctaatgtattatggcccatggtaagagaagag |
159 |
Q |
| |
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|||| |||| ||||||| || |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || ||||||||||| | |||| |
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| T |
17513519 |
gtgattcatactagaaattttctccaaagaattgatcacaatgtcctcaatacgtggtaggtacatttctaatgtattgtgacccatggtaagggcagag |
17513618 |
T |
|
| Q |
160 |
attaagcgtctaaaacgcatgtgttcttttcgagagaaactccaaactggtttacatctcatcacttctttggtagattttggataaccaatcttaaa |
257 |
Q |
| |
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| ||| ||| | |||| | ||||||||| | ||||||||| | |||| ||| |||||||| |||| ||||||||||||||||||||||| |
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|
| T |
17513619 |
actaaacgttttaaacctttatgttctttttcatcataactccaaaaagatttaaatccaatcacttccatggtggattttggataaccaatcttaaa |
17513716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 60 - 257
Target Start/End: Complemental strand, 17539695 - 17539498
Alignment:
| Q |
60 |
gtgactcatgctagaaagttcctccaaagaattgatcacaatgtcttcaatacgtggtatgtacatttctaatgtattatggcccatggtaagagaagag |
159 |
Q |
| |
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|||| |||| ||||||| || |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || ||||||||||| | |||| |
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| T |
17539695 |
gtgattcatactagaaattttctccaaagaattgatcacaatgtcctcaatacgtggtaggtacatttctaatgtattgtgacccatggtaagggcagag |
17539596 |
T |
|
| Q |
160 |
attaagcgtctaaaacgcatgtgttcttttcgagagaaactccaaactggtttacatctcatcacttctttggtagattttggataaccaatcttaaa |
257 |
Q |
| |
|
| ||| ||| | |||| | ||||||||| | ||||||||| | |||| ||| |||||||| |||| ||||||||||||||||||||||| |
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|
| T |
17539595 |
actaaacgttttaaacctttatgttctttttcatcataactccaaaaagatttaaatccaatcacttccatggtggattttggataaccaatcttaaa |
17539498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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