View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7250_low_4 (Length: 363)

Name: NF7250_low_4
Description: NF7250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7250_low_4
NF7250_low_4
[»] chr3 (2 HSPs)
chr3 (21-236)||(48707268-48707483)
chr3 (230-344)||(48707901-48708013)
[»] chr5 (10 HSPs)
chr5 (88-267)||(13856581-13856760)
chr5 (180-334)||(16021641-16021795)
chr5 (80-131)||(16022319-16022370)
chr5 (230-338)||(14391823-14391931)
chr5 (80-132)||(14389775-14389827)
chr5 (218-268)||(14398000-14398050)
chr5 (24-64)||(14389597-14389637)
chr5 (225-268)||(14395714-14395757)
chr5 (42-80)||(13856781-13856819)
chr5 (22-64)||(16022487-16022529)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 48707268 - 48707483
Alignment:
Q  21 cagaaatcaagaaaacttggaaagcttgttgatatagtttatcaggaatgaatcgaatttatgttctgtaacatggtttatttcattgcagtcaccaaaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  48707268 cagaaatcaagaaaacttggaaagcttgttgatatagtttatcaggaatgaatcgaatttatgttatgtaacatggtttatttcattgcagtcacgaaaa 48707367  T
Q  121 ccaaagacacttctttgaatctgaagagttcatgccatgaaaaattcttgtttaagggaagaagcagaagaaaatatttgcatctgaaaagttcatacca 220  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  48707368 ccaaagacacttcttttaatctgaagagttcatgccatgaaaaattcttgtttaggagaagaagcagaagaaaatatttgcatctgaaaagttcatacca 48707467  T
Q  221 ttaacaagaaaagtct 236  Q
    ||||||||||||||||    
T  48707468 ttaacaagaaaagtct 48707483  T

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Target: chr3; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 230 - 344
Target Start/End: Original strand, 48707901 - 48708013
Alignment:
Q  230 aaagtcttcaaacattcgttcaatcagagtagcaaggttgccacaaattgttttccttcacatgagagtgtacattctgaatggataagtattcgagatt 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  48707901 aaagtcttcaaacattcgttcaatcagagtagcaaggttgccacaaattgttttccttcac--gagagtgtacattctgaatggataagtattcgagatt 48707998  T
Q  330 gtttatattattact 344  Q
    |||||||||||||||    
T  48707999 gtttatattattact 48708013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 88 - 267
Target Start/End: Complemental strand, 13856760 - 13856581
Alignment:
Q  88 gtaacatggtttatttcattgcagtcaccaaaaccaaagacacttctttgaatctgaagagttcatgccatgaaaaattcttgtttaagggaagaagcag 187  Q
    ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||  |  |||||||||    
T  13856760 gtaacatggtttatttcatagcagttaccaaaactaaagacacttctttgaatctgaagaattcatgccatgaaaaatccttgtttcggataagaagcag 13856661  T
Q  188 aagaaaatatttgcatctgaaaagttcataccattaacaagaaaagtcttcaaacattcgttcaatcagagtagcaaggt 267  Q
    ||||||| |||||||||||||| |||||| |||| ||||| ||||||||| || || |||||||||||||||||||||||    
T  13856660 aagaaaagatttgcatctgaaatgttcatgccatgaacaataaaagtcttaaatcactcgttcaatcagagtagcaaggt 13856581  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 16021795 - 16021641
Alignment:
Q  180 agaagcagaagaaaatatttgcatctgaaaagttcataccattaacaagaaaagtcttcaaacattcgttcaatcagagtagcaaggttgccacaaattg 279  Q
    |||||||||||||||   ||||||||||| ||||||| | || |||||  |||| |||||||||||||||||| ||||||||||||||| || |||||||    
T  16021795 agaagcagaagaaaagcattgcatctgaagagttcatgctatgaacaacgaaagccttcaaacattcgttcaagcagagtagcaaggtt-ccgcaaattg 16021697  T
Q  280 ttttccttcacatgagagtgtacattctga-atggataagtattcgagattgttta 334  Q
    ||||||||||  ||| ||||||||||||||  ||| ||||| ||||||||||||||    
T  16021696 ttttccttcatgtgacagtgtacattctgagttgggtaagttttcgagattgttta 16021641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 16022370 - 16022319
Alignment:
Q  80 tatgttctgtaacatggtttatttcattgcagtcaccaaaaccaaagacact 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16022370 tatgttctgtaacatggtttatttcattgcagtcaccaaaaccaaagacact 16022319  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 14391823 - 14391931
Alignment:
Q  230 aaagtcttcaaacattcgttcaatcagagtagcaaggttgccacaaattgttttccttcacatgagagtgtacattctga-atggataagtattcgagat 328  Q
    |||||||| |||||||||||||   |||||||||||||| || |||||||||||||| ||||||| ||||||||||||||  ||| |||||||| ||||     
T  14391823 aaagtcttaaaacattcgttcagctagagtagcaaggtt-ccgcaaattgttttcctgcacatgaaagtgtacattctgagttgggtaagtatttgagag 14391921  T
Q  329 tgtttatatt 338  Q
    ||||||||||    
T  14391922 tgtttatatt 14391931  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 14389775 - 14389827
Alignment:
Q  80 tatgttctgtaacatggtttatttcattgcagtcaccaaaaccaaagacactt 132  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  14389775 tatgttttgtaacatggtttattttattgcagtcaccaaaaccaaagacactt 14389827  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 14398000 - 14398050
Alignment:
Q  218 ccattaacaagaaaagtcttcaaacattcgttcaatcagagtagcaaggtt 268  Q
    |||| |||||||||||| |||||||||| ||||||||||||||||||||||    
T  14398000 ccatgaacaagaaaagttttcaaacatttgttcaatcagagtagcaaggtt 14398050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 14389597 - 14389637
Alignment:
Q  24 aaatcaagaaaacttggaaagcttgttgatatagtttatca 64  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  14389597 aaatcaagaaagcttggaaagtttgttgatatagtttatca 14389637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 14395714 - 14395757
Alignment:
Q  225 caagaaaagtcttcaaacattcgttcaatcagagtagcaaggtt 268  Q
    |||||||||| |||||||||||||||||| |||||| |||||||    
T  14395714 caagaaaagttttcaaacattcgttcaataagagtaccaaggtt 14395757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 13856819 - 13856781
Alignment:
Q  42 aagcttgttgatatagtttatcaggaatgaatcgaattt 80  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  13856819 aagctttttgatatagtttatcaggaatgaatggaattt 13856781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 16022529 - 16022487
Alignment:
Q  22 agaaatcaagaaaacttggaaagcttgttgatatagtttatca 64  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||    
T  16022529 agaaatcaagaaaacctggaaagtttgtcgatatagtttatca 16022487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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