View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7250_low_5 (Length: 301)
Name: NF7250_low_5
Description: NF7250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7250_low_5 |
 | |
|
| [»] scaffold0168 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 26494425 - 26494690
Alignment:
| Q |
17 |
catcaacaaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatcttt |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| |||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
26494425 |
catcaacaaataaattatcccaaccactatctctcaatgtggccaaccgagttttgactacattaattaattccatggcgagcacaatattaagatcttt |
26494524 |
T |
|
| Q |
117 |
tctttgcaagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccattttttctatcaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26494525 |
tctttgcaagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccattttttctatcaaa |
26494624 |
T |
|
| Q |
217 |
cccgccgcttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26494625 |
cccgccgcttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
26494690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 38575999 - 38576264
Alignment:
| Q |
16 |
acatcaacaaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatctt |
115 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
38575999 |
acatcaacaaataaattatcccaaccactatctctcaatgtggccaactgagctttgacgacattaattaattccatggcactaacaatcttaagatctt |
38576098 |
T |
|
| Q |
116 |
ttctttgcaagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccattttttctatcaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38576099 |
ttctttgcaagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccatttttt-tatcaa |
38576197 |
T |
|
| Q |
216 |
acccgccgcttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38576198 |
acccgccgcttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
38576264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 45195057 - 45194791
Alignment:
| Q |
16 |
acatcaacaaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatctt |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45195057 |
acatcaacaaataaattatcccaatcgctatttctcaatgtggccaaccgatctttgacgacattaattaattccatggcaagcacaatattaagatctt |
45194958 |
T |
|
| Q |
116 |
ttctttgcaagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccattttttctatcaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45194957 |
ttctttgcaagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctcaattttttctatcaa |
45194858 |
T |
|
| Q |
216 |
acccgccgcttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45194857 |
acccgccgcttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacgaaggac |
45194791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 27364348 - 27364082
Alignment:
| Q |
16 |
acatcaacaaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatctt |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||| ||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27364348 |
acatcaacaaataaattatcccaaccactatctttcaatgtggccaaccgagttttgacaacattaattaattccatggcaagcacaatattaagatctt |
27364249 |
T |
|
| Q |
116 |
ttctttgcaagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccattttttctatcaa |
215 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27364248 |
ttctttgcaagatttttgaaagcttgtttgtgataccaaacaactttaacattaacttcaaaatgaaagaaaatttaaagctctccattttttctatcaa |
27364149 |
T |
|
| Q |
216 |
acccgccgcttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27364148 |
acccgccgcttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
27364082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 31988494 - 31988228
Alignment:
| Q |
16 |
acatcaacaaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatctt |
115 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31988494 |
acatcaacaaataaattatcccaaccactatctctcaatgtggccaaccgagctttgacgacattaattaattccatggcactaacaatattaagatctt |
31988395 |
T |
|
| Q |
116 |
ttctttgcaagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccattttttctatcaa |
215 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31988394 |
ttatttgcaagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctttccattttttctatcaa |
31988295 |
T |
|
| Q |
216 |
acccgccgcttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31988294 |
acccgccgcttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
31988228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 51408814 - 51409077
Alignment:
| Q |
16 |
acatcaacaaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatctt |
115 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
51408814 |
acatcaacgaataaattatcccaaccactatctctcaatgtggccaaccgagctctgacgacattaattaattccatggcaagcacaatattaagatctt |
51408913 |
T |
|
| Q |
116 |
ttctttgcaagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccattttttctatcaa |
215 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
51408914 |
ttctttgcaagatttttgaaagatcgattgtgataccaaacagctttaacattaacttcaaaatgaaagcaaatttaaaactctccattttttctatcaa |
51409013 |
T |
|
| Q |
216 |
acccgccgcttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggag |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51409014 |
acccgccgcttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggag |
51409077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 53709863 - 53709597
Alignment:
| Q |
16 |
acatcaacaaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatctt |
115 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
53709863 |
acatcaacaaataaattgtcccaaccattatctctcaatgtggccaaccgagctttgacgacattaattaattccatggcactaacaatattaagatatt |
53709764 |
T |
|
| Q |
116 |
ttctttgcaagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccattttttctatcaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
53709763 |
ttctttgcaagatttttgaaagctcgtttgtgatactaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccatcttttctatcaa |
53709664 |
T |
|
| Q |
216 |
acccgccgcttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53709663 |
acccgccgcttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
53709597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 46 - 197
Target Start/End: Original strand, 37382384 - 37382535
Alignment:
| Q |
46 |
tctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatcttttctttgcaagatttttgaaagctcgtttg |
145 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37382384 |
tctctcaatgtggtcaatcgagctttgacgacatcaattaattccatggcaaacacaatattaagatcttttctttgcacgatttttgaaagctcgtttg |
37382483 |
T |
|
| Q |
146 |
tgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagct |
197 |
Q |
| |
|
|||||||||| ||||| |||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
37382484 |
tgataccaaataacttcaacattaacttccaaatgaaaacaaatctaaagct |
37382535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 24 - 282
Target Start/End: Complemental strand, 15271 - 15013
Alignment:
| Q |
24 |
aaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatcttttctttgc |
123 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| ||||||| |||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15271 |
aaataaattatcccaaccattatctctcaatgtggcaaaccgagatttgacaacattaattaaatccatggcaagcacaatattaagatcttttctttgc |
15172 |
T |
|
| Q |
124 |
aagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccattttttctatcaaacccgccg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15171 |
aagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaaacaaatttaaagctctccattttttctatcaaacccgctg |
15072 |
T |
|
| Q |
224 |
cttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
282 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
15071 |
cttgagatggtccacgtccatctttatcaaccatactaagcaccactaacacggaggac |
15013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 24 - 282
Target Start/End: Complemental strand, 196562 - 196304
Alignment:
| Q |
24 |
aaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatcttttctttgc |
123 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| ||||||| |||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
196562 |
aaataaattatcccaaccattatctctcaatgtggcaaaccgagatttgacaacattaattaaatccatggcaagcacaatattaagatcttttctttgc |
196463 |
T |
|
| Q |
124 |
aagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccattttttctatcaaacccgccg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
196462 |
aagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaaacaaatttaaagctctccattttttctatcaaacccgctg |
196363 |
T |
|
| Q |
224 |
cttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
282 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
196362 |
cttgagatggtccacgtccatctttatcaaccatactaagcaccactaacacggaggac |
196304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 24 - 282
Target Start/End: Original strand, 26541373 - 26541631
Alignment:
| Q |
24 |
aaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatcttttctttgc |
123 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| ||||||| |||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26541373 |
aaataaattatcccaaccattatctctcaatgtggcaaaccgagatttgacaacattaattaaatccatggcaagcacaatattaagatcttttctttgc |
26541472 |
T |
|
| Q |
124 |
aagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccattttttctatcaaacccgccg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26541473 |
aagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaaacaaatttaaagctctccattttttctatcaaacccgctg |
26541572 |
T |
|
| Q |
224 |
cttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
282 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
26541573 |
cttgagatggtccacgtccatctttatcaaccatactaagcaccactaacacggaggac |
26541631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 203347 - 203286
Alignment:
| Q |
20 |
caacaaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacatta |
81 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
203347 |
caacaaataaattatcccaaccactatctctcaatgtggccaaccgaactttgacgacatta |
203286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 24 - 282
Target Start/End: Complemental strand, 22470182 - 22469924
Alignment:
| Q |
24 |
aaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatcttttctttgc |
123 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| ||||||| |||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22470182 |
aaataaattatcccaaccattatctctcaatgtggcaaaccgagatttgacaacattaattaaatccatggcaagcacaatattaagatcttttctttgc |
22470083 |
T |
|
| Q |
124 |
aagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccattttttctatcaaacccgccg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22470082 |
aagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaaacaaatttaaagctctccattttttctatcaaacccgctg |
22469983 |
T |
|
| Q |
224 |
cttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
282 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
22469982 |
cttgagatggtccacgtccatctttatcaaccatactaagcaccactaacacggaggac |
22469924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 24 - 282
Target Start/End: Complemental strand, 34525809 - 34525551
Alignment:
| Q |
24 |
aaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatcttttctttgc |
123 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| ||||||| |||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34525809 |
aaataaattatcccaaccattatctctcaatgtggcaaaccgagatttgacaacattaattaaatccatggcaagcacaatattaagatcttttctttgc |
34525710 |
T |
|
| Q |
124 |
aagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccattttttctatcaaacccgccg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34525709 |
aagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaaacaaatttaaagctctccattttttctatcaaacccgctg |
34525610 |
T |
|
| Q |
224 |
cttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
282 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
34525609 |
cttgagatggtccacgtccatctttatcaaccatactaagcaccactaacacggaggac |
34525551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 24 - 282
Target Start/End: Complemental strand, 22464127 - 22463870
Alignment:
| Q |
24 |
aaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatcttttctttgc |
123 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| |||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22464127 |
aaataaattatcccaaccattatctctcaatgtggcaaaccgagctttgacaacattaattaaatccatggcaagcacaatattaagatcttttctttgc |
22464028 |
T |
|
| Q |
124 |
aagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccattttttctatcaaacccgccg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || | |
|
|
| T |
22464027 |
aagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaaacaaatttaaagctctccattttttctatcaaaccagctg |
22463928 |
T |
|
| Q |
224 |
cttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
282 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
22463927 |
cttgagatggtccacgtccatctttatcaaccatac-aagcaccactaacacggaggac |
22463870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 35650375 - 35650483
Alignment:
| Q |
24 |
aaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatcttttctttgc |
123 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| |||||| |||||||||||||||||||||||||||| ||||| || |||||||||||| ||||||||| |
|
|
| T |
35650375 |
aaataaattatcccaaccactatctttcaatgtggccaatcgagctttgacgacattaattaattccaaggcaagcaaaatattaagatcatttctttgc |
35650474 |
T |
|
| Q |
124 |
aagattttt |
132 |
Q |
| |
|
||||||||| |
|
|
| T |
35650475 |
aagattttt |
35650483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 24 - 282
Target Start/End: Original strand, 21974506 - 21974764
Alignment:
| Q |
24 |
aaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatcttttctttgc |
123 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| ||||||| |||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21974506 |
aaataaattatcccaaccattatctctcaatgtggcaaaccgagatttgacaacattaattaaatccatggcaagcacaatattaagatcttttctttgc |
21974605 |
T |
|
| Q |
124 |
aagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccattttttctatcaaacccgccg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21974606 |
aagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaaacaaatttaaagctctccattttttctatcaaacccgctg |
21974705 |
T |
|
| Q |
224 |
cttgagatggtccacgtccatcttcatgaaccatactaagcaccactaacacggaggac |
282 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
21974706 |
cttgagatggtcaacgtccatctttatcaaccatactaagcaccactaacacggaggac |
21974764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 24 - 274
Target Start/End: Original strand, 30792176 - 30792426
Alignment:
| Q |
24 |
aaataaattatcccaaccgctatctctcaatgcggccaaccgagctttgacgacattaattaattccatggcaaacacaatattaagatcttttctttgc |
123 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||| |
|
|
| T |
30792176 |
aaataaattatcccaaccactatctctcaatgtggccaaccgaactttgacaacattaattaaatccatggcaagcacaatattaagatattttctttgt |
30792275 |
T |
|
| Q |
124 |
aagatttttgaaagctcgtttgtgataccaaacaactttaacattaacttcaaaatgaaagcaaatttaaagctctccattttttctatcaaacccgccg |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30792276 |
aagatttttgaaagctcgtttgtgataccaaacaaatttaacattatcttcaaaatgaaaacaaatttaaagctctccattttttctatcaaacccgtcg |
30792375 |
T |
|
| Q |
224 |
cttgagatggtccacgtccatcttcatgaaccatactaagcaccactaaca |
274 |
Q |
| |
|
||||||||||| |||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
30792376 |
cttgagatggttcacgtccatcttgatcaaccatactaagcaccactaaca |
30792426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 24073188 - 24073140
Alignment:
| Q |
33 |
atcccaaccgctatctctcaatgcggccaaccgagctttgacgacatta |
81 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||| |||||||||||||| |
|
|
| T |
24073188 |
atcccaaccactatctctcaatgtggtcaaccgaactttgacgacatta |
24073140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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