View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7251_low_1 (Length: 543)

Name: NF7251_low_1
Description: NF7251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7251_low_1
NF7251_low_1
[»] chr3 (7 HSPs)
chr3 (1-526)||(53761824-53762349)
chr3 (1-45)||(25459541-25459585)
chr3 (1-45)||(39980844-39980888)
chr3 (7-45)||(32663759-32663797)
chr3 (9-38)||(46886610-46886639)
chr3 (8-44)||(902045-902081)
chr3 (6-34)||(18405753-18405781)
[»] chr4 (3 HSPs)
chr4 (1-44)||(35571543-35571586)
chr4 (6-34)||(20935946-20935974)
chr4 (1-37)||(30585667-30585703)
[»] chr8 (3 HSPs)
chr8 (1-48)||(31884848-31884895)
chr8 (1-34)||(26717342-26717375)
chr8 (1-37)||(12976327-12976363)
[»] chr5 (2 HSPs)
chr5 (6-45)||(11684520-11684559)
chr5 (1-34)||(16937805-16937838)
[»] chr7 (1 HSPs)
chr7 (6-48)||(3968539-3968581)
[»] chr6 (2 HSPs)
chr6 (7-41)||(10016744-10016778)
chr6 (1-30)||(34429640-34429669)
[»] chr2 (3 HSPs)
chr2 (1-34)||(11514011-11514044)
chr2 (6-43)||(13735975-13736012)
chr2 (4-48)||(14209319-14209363)
[»] chr1 (2 HSPs)
chr1 (1-38)||(2832087-2832124)
chr1 (11-44)||(36495403-36495436)


Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 53762349 - 53761824
Alignment:
Q  1 atgctagtagataagctcaaataaaccaatccaagcagaccctaagtgaccttgttggtgctgcttagtttctgttgtcaaatcattgttgtttccactg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53762349 atgctagtagataagctcaaataaaccaatccaagcaggccctaagtgaccttgttggtgctgcttagtttctgttgtcaaatcattgttgtttccactg 53762250  T
Q  101 cacatcaacactaagtttcttcattatgcaatcactggtaggtttgcaaatcctaagtttgttttattttgtgctacggcaacatggtttcgacctttgc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  53762249 cacatcaacactaagtttcttcattatgcaatcactggtaggtttgcaaatcctaagtttgttttattttgtgctatggcaacatggtttcgacctttgc 53762150  T
Q  201 agttgctgagtttatttgggccatatcctagtttgaatccctaatccacattcatatccgtgatttgcgaacttaattaagtatttggaaacaataatga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53762149 agttgctgagtttatttgggccatatcctagtttgaatccctaatccacattcatatccctgatttgcgaacttaattaagtatttggaaacaataatga 53762050  T
Q  301 ataggtccatcagtgagaaccacgagtacttgaatcaaatatttacaatggttcaagtgttctcctccctgacctttctatctctcaatgtttctgaatt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53762049 ataggtccatcagtgagaaccacgagtacttgaatcaaatatttacaacggttcaagtgttctcctccctgacctttctatctctcaatgtttctgaatt 53761950  T
Q  401 tggcttattatttatcatagtgcaccctgaaaccataaataaatgaatctacactcttgatttggtcagtttgctctttgcttttgccaatagtttattt 500  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  53761949 tggtttattatttatcatagtgcaccctgaaaccataaataaatgaatctacactcttgatttggtcagtttgctctttgcttttgccaatagtatattt 53761850  T
Q  501 gtttggcctgataaatgccccttttt 526  Q
    ||||||| ||||||||||||||||||    
T  53761849 gtttggcatgataaatgccccttttt 53761824  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25459585 - 25459541
Alignment:
Q  1 atgctagtagataagctcaaataaaccaatccaagcagaccctaa 45  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||    
T  25459585 atgctagttgataagctcaaataaatcaatccaaacagaccctaa 25459541  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39980844 - 39980888
Alignment:
Q  1 atgctagtagataagctcaaataaaccaatccaagcagaccctaa 45  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||    
T  39980844 atgctagtagataagctcaaacaagccaatccaaacagaccctaa 39980888  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 32663759 - 32663797
Alignment:
Q  7 gtagataagctcaaataaaccaatccaagcagaccctaa 45  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  32663759 gtagataagctcaaataagccaatccaaacagaccctaa 32663797  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 46886639 - 46886610
Alignment:
Q  9 agataagctcaaataaaccaatccaagcag 38  Q
    ||||||||||||||||||||||||||||||    
T  46886639 agataagctcaaataaaccaatccaagcag 46886610  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 902045 - 902081
Alignment:
Q  8 tagataagctcaaataaaccaatccaagcagacccta 44  Q
    |||||||||||||||||| |||||||| |||||||||    
T  902045 tagataagctcaaataaagcaatccaaacagacccta 902081  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 18405781 - 18405753
Alignment:
Q  6 agtagataagctcaaataaaccaatccaa 34  Q
    |||||||||||||||||||||||||||||    
T  18405781 agtagataagctcaaataaaccaatccaa 18405753  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35571586 - 35571543
Alignment:
Q  1 atgctagtagataagctcaaataaaccaatccaagcagacccta 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  35571586 atgctagtagataagctcaaataagccaatccaaacagacccta 35571543  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 20935974 - 20935946
Alignment:
Q  6 agtagataagctcaaataaaccaatccaa 34  Q
    |||||||||||||||||||||||||||||    
T  20935974 agtagataagctcaaataaaccaatccaa 20935946  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30585667 - 30585703
Alignment:
Q  1 atgctagtagataagctcaaataaaccaatccaagca 37  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  30585667 atgcaagtagataagctcaaataaactaatccaagca 30585703  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31884895 - 31884848
Alignment:
Q  1 atgctagtagataagctcaaataaaccaatccaagcagaccctaagtg 48  Q
    ||||||||||||||||||||||||  |||||||||||| ||| |||||    
T  31884895 atgctagtagataagctcaaataacgcaatccaagcaggccccaagtg 31884848  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 26717342 - 26717375
Alignment:
Q  1 atgctagtagataagctcaaataaaccaatccaa 34  Q
    |||||||||||||| |||||||||||||||||||    
T  26717342 atgctagtagataaactcaaataaaccaatccaa 26717375  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12976327 - 12976363
Alignment:
Q  1 atgctagtagataagctcaaataaaccaatccaagca 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  12976327 atgctagtagataagctcaaataagccaaaccaagca 12976363  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 11684520 - 11684559
Alignment:
Q  6 agtagataagctcaaataaaccaatccaagcagaccctaa 45  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  11684520 agtagataagctcaaataaaccaatctaaacagaccctaa 11684559  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 16937838 - 16937805
Alignment:
Q  1 atgctagtagataagctcaaataaaccaatccaa 34  Q
    |||||||||||||||||||||||| |||||||||    
T  16937838 atgctagtagataagctcaaataagccaatccaa 16937805  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 3968581 - 3968539
Alignment:
Q  6 agtagataagctcaaataaaccaatccaagcagaccctaagtg 48  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||    
T  3968581 agtagataacctcaaataaactaatccaaacagaccctaagtg 3968539  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 10016744 - 10016778
Alignment:
Q  7 gtagataagctcaaataaaccaatccaagcagacc 41  Q
    |||||||||||||||||||||||||||| ||||||    
T  10016744 gtagataagctcaaataaaccaatccaaacagacc 10016778  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 34429669 - 34429640
Alignment:
Q  1 atgctagtagataagctcaaataaaccaat 30  Q
    ||||||||||||||||||||||||||||||    
T  34429669 atgctagtagataagctcaaataaaccaat 34429640  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 11514011 - 11514044
Alignment:
Q  1 atgctagtagataagctcaaataaaccaatccaa 34  Q
    |||||||||||||| |||||||||||||||||||    
T  11514011 atgctagtagataatctcaaataaaccaatccaa 11514044  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 13736012 - 13735975
Alignment:
Q  6 agtagataagctcaaataaaccaatccaagcagaccct 43  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  13736012 agtagataagctcaaataaaccaattcaagcaaaccct 13735975  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 14209319 - 14209363
Alignment:
Q  4 ctagtagataagctcaaataaaccaatccaagcagaccctaagtg 48  Q
    |||||| |||| ||||||||||||||||||| |||| ||||||||    
T  14209319 ctagtaaataaactcaaataaaccaatccaaacagaacctaagtg 14209363  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2832087 - 2832124
Alignment:
Q  1 atgctagtagataagctcaaataaaccaatccaagcag 38  Q
    |||||||||||||||||||||||| | |||||||||||    
T  2832087 atgctagtagataagctcaaataagctaatccaagcag 2832124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 36495436 - 36495403
Alignment:
Q  11 ataagctcaaataaaccaatccaagcagacccta 44  Q
    |||||||||||||||||||||||| |||||||||    
T  36495436 ataagctcaaataaaccaatccaaacagacccta 36495403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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