View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7251_low_2 (Length: 379)
Name: NF7251_low_2
Description: NF7251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7251_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 21582848 - 21582501
Alignment:
| Q |
19 |
acatcagagaatagaaggagggacaactttttcaaatcaaacaaatgttcatagcaaaggtcgtgctgctgccccaagtgtttcaaacaagaagggtggg |
118 |
Q |
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| T |
21582848 |
acataagagaatagaaggagggacaactttttcaattccaacaaaagttaatagcaaaggtcgtgttgctgccccaagagtttcaaacaagaagggtggg |
21582749 |
T |
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| Q |
119 |
ggtt-cttgcgtcactgtgctcgtcggttgaagcatattgcgcgtctccctgacattgataaaaaggtagtgcttcgcgctttacgtaagactactaaga |
217 |
Q |
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| T |
21582748 |
ggttacttgcgtcactgtgcccgtcggttgaaacatattgcgcgtctccctgacgctgatagaaaggaagtgcttcgcgctttacgtaagactactaaga |
21582649 |
T |
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| Q |
218 |
agaggaagaaggtggctggtggctctcaagggattgtttctttctctgataaatctcctcaaagtggatcccaagcgtctgtaaataataatgactggtc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21582648 |
agaggaagaaggtggctggtggctctcaagggattgtttctttctctgataaatctcctcaaagtggatcccaagcatctgtaaataataatgactggtc |
21582549 |
T |
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| Q |
318 |
taataggttggttgttcatggcaatgataagataaaggcagatgatgt |
365 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21582548 |
taattggttggttgttcatggcaatgataaggtaaaggcagatgatgt |
21582501 |
T |
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