View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7252_high_1 (Length: 545)

Name: NF7252_high_1
Description: NF7252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7252_high_1
NF7252_high_1
[»] chr2 (21 HSPs)
chr2 (1-418)||(4975110-4975526)
chr2 (1-418)||(4993018-4993434)
chr2 (418-528)||(4974977-4975087)
chr2 (418-528)||(4992885-4992995)
chr2 (435-518)||(12343060-12343143)
chr2 (322-407)||(37559832-37559917)
chr2 (436-518)||(7696204-7696286)
chr2 (322-411)||(33533364-33533453)
chr2 (322-409)||(1269826-1269912)
chr2 (322-418)||(29997310-29997406)
chr2 (468-522)||(10173368-10173422)
chr2 (463-522)||(41086573-41086632)
chr2 (322-418)||(33788246-33788341)
chr2 (447-519)||(34230444-34230515)
chr2 (467-515)||(41113525-41113573)
chr2 (322-405)||(10173199-10173282)
chr2 (456-518)||(1269721-1269783)
chr2 (316-418)||(22884728-22884830)
chr2 (446-500)||(37770415-37770469)
chr2 (463-516)||(27879936-27879988)
chr2 (322-406)||(12343182-12343266)
[»] chr3 (24 HSPs)
chr3 (426-522)||(37123620-37123716)
chr3 (328-409)||(33143578-33143659)
chr3 (446-520)||(12086482-12086556)
chr3 (435-517)||(25594304-25594385)
chr3 (465-522)||(28937498-28937555)
chr3 (322-418)||(14280169-14280265)
chr3 (361-413)||(14754942-14754994)
chr3 (450-510)||(32010012-32010072)
chr3 (463-523)||(33143734-33143794)
chr3 (363-410)||(25648056-25648103)
chr3 (322-385)||(32010185-32010248)
chr3 (465-523)||(14755047-14755105)
chr3 (424-514)||(50518833-50518922)
chr3 (322-374)||(46358002-46358054)
chr3 (424-518)||(4170986-4171081)
chr3 (463-522)||(7105080-7105139)
chr3 (435-518)||(14194175-14194256)
chr3 (463-513)||(4463881-4463931)
chr3 (424-517)||(48893097-48893190)
chr3 (322-407)||(50518709-50518794)
chr3 (322-418)||(4171109-4171205)
chr3 (490-522)||(14879676-14879708)
chr3 (435-514)||(27399194-27399270)
chr3 (329-409)||(37123744-37123824)
[»] chr8 (10 HSPs)
chr8 (424-515)||(10248311-10248402)
chr8 (424-521)||(17656480-17656578)
chr8 (322-524)||(43312275-43312483)
chr8 (322-418)||(10248185-10248281)
chr8 (322-418)||(12197695-12197791)
chr8 (322-418)||(12442123-12442219)
chr8 (472-521)||(2273838-2273887)
chr8 (322-379)||(2613167-2613224)
chr8 (470-515)||(22325886-22325931)
chr8 (437-517)||(8862380-8862460)
[»] chr1 (19 HSPs)
chr1 (322-409)||(11439640-11439727)
chr1 (436-522)||(32882605-32882691)
chr1 (435-520)||(34775112-34775197)
chr1 (328-418)||(34775237-34775326)
chr1 (322-413)||(4431045-4431136)
chr1 (322-407)||(12636079-12636164)
chr1 (418-499)||(46768437-46768518)
chr1 (322-418)||(9312960-9313056)
chr1 (424-518)||(10785206-10785300)
chr1 (456-518)||(31290796-31290858)
chr1 (322-418)||(376427-376522)
chr1 (322-418)||(27102547-27102643)
chr1 (322-401)||(7451881-7451960)
chr1 (447-522)||(11439786-11439861)
chr1 (441-516)||(16577504-16577579)
chr1 (423-514)||(32863290-32863381)
chr1 (322-405)||(10785081-10785164)
chr1 (427-506)||(42374401-42374479)
chr1 (360-411)||(46768549-46768600)
[»] chr5 (25 HSPs)
chr5 (424-522)||(14302188-14302286)
chr5 (418-521)||(26045702-26045805)
chr5 (322-412)||(21391898-21391988)
chr5 (439-522)||(33109957-33110040)
chr5 (322-418)||(26405168-26405264)
chr5 (334-418)||(13953878-13953964)
chr5 (418-493)||(30097600-30097675)
chr5 (322-400)||(7391617-7391695)
chr5 (424-518)||(8297714-8297808)
chr5 (436-518)||(10174923-10175005)
chr5 (465-523)||(33258665-33258723)
chr5 (322-400)||(8297853-8297931)
chr5 (435-508)||(7682806-7682879)
chr5 (465-522)||(25992249-25992306)
chr5 (424-517)||(26405292-26405384)
chr5 (356-412)||(5187313-5187369)
chr5 (334-418)||(25992366-25992450)
chr5 (432-515)||(13954001-13954084)
chr5 (322-406)||(33109822-33109906)
chr5 (438-493)||(7195059-7195114)
chr5 (424-515)||(21398064-21398155)
chr5 (322-396)||(7194921-7194995)
chr5 (457-522)||(7161793-7161858)
chr5 (427-516)||(39183951-39184038)
chr5 (358-418)||(30097698-30097758)
[»] chr4 (18 HSPs)
chr4 (322-517)||(52009083-52009286)
chr4 (446-515)||(22810927-22810996)
chr4 (435-521)||(49747768-49747853)
chr4 (446-519)||(19311132-19311205)
chr4 (322-418)||(42719521-42719617)
chr4 (435-518)||(41117723-41117806)
chr4 (324-399)||(53823048-53823123)
chr4 (436-518)||(38636990-38637072)
chr4 (467-523)||(19673336-19673392)
chr4 (435-519)||(25753415-25753499)
chr4 (322-401)||(41117588-41117667)
chr4 (322-418)||(9262808-9262904)
chr4 (435-522)||(16832775-16832862)
chr4 (467-523)||(19815009-19815065)
chr4 (359-418)||(22810830-22810888)
chr4 (447-522)||(39420803-39420878)
chr4 (446-516)||(48098580-48098647)
chr4 (358-410)||(28967248-28967300)
[»] chr7 (15 HSPs)
chr7 (424-518)||(24324542-24324637)
chr7 (328-418)||(6726045-6726135)
chr7 (435-513)||(23983453-23983530)
chr7 (447-514)||(1321041-1321109)
chr7 (435-506)||(28534284-28534354)
chr7 (335-410)||(33719338-33719413)
chr7 (435-520)||(33719206-33719292)
chr7 (328-409)||(44755941-44756022)
chr7 (322-418)||(6716356-6716452)
chr7 (463-514)||(6716522-6716571)
chr7 (318-401)||(1321174-1321257)
chr7 (438-516)||(22567888-22567964)
chr7 (465-522)||(36674730-36674786)
chr7 (356-409)||(48058326-48058379)
chr7 (470-514)||(43235601-43235645)
[»] scaffold0119 (2 HSPs)
scaffold0119 (322-409)||(41790-41876)
scaffold0119 (452-518)||(41915-41981)
[»] scaffold0063 (1 HSPs)
scaffold0063 (450-520)||(58369-58439)
[»] scaffold0050 (2 HSPs)
scaffold0050 (424-518)||(36950-37043)
scaffold0050 (322-406)||(37084-37168)
[»] chr6 (9 HSPs)
chr6 (322-407)||(3880232-3880317)
chr6 (322-418)||(13423727-13423823)
chr6 (418-480)||(15120341-15120403)
chr6 (359-418)||(6860398-6860457)
chr6 (436-494)||(32935099-32935157)
chr6 (463-523)||(3880378-3880439)
chr6 (322-387)||(16180477-16180541)
chr6 (362-410)||(20701457-20701505)
chr6 (463-517)||(20701584-20701638)
[»] scaffold1384 (1 HSPs)
scaffold1384 (446-522)||(1422-1498)
[»] scaffold0200 (1 HSPs)
scaffold0200 (456-518)||(19621-19683)


Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 4975526 - 4975110
Alignment:
Q  1 tgaaaaatgtatgtaccttcccttagtttagttatttattcatcctgctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4975526 tgaaaaatgtatgtaccttcccttagtttagttatttattcatcctgctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaat 4975427  T
Q  101 agatgtcttctaacttatgaataaatgtttgatataacttccttaaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4975426 agatgtcttctaacttatgaataaatgtttgatataacttccttaaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttc 4975327  T
Q  201 aacccttcggttattctctcttccttttagcattttcttcaataatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaag 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4975326 aacccttcggttattctctcttccttttagtattttcttcaataatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaag 4975227  T
Q  301 aaatattactatattgatttcttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaa 400  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||| ||||||||||||    
T  4975226 aaatattactatattgattt-ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaa 4975128  T
Q  401 ctaaaggcgccgtgtata 418  Q
    ||||||||| ||| ||||    
T  4975127 ctaaaggcgtcgtatata 4975110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 4993434 - 4993018
Alignment:
Q  1 tgaaaaatgtatgtaccttcccttagtttagttatttattcatcctgctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4993434 tgaaaaatgtatgtaccttcccttagtttagttatttattcatcctgctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaat 4993335  T
Q  101 agatgtcttctaacttatgaataaatgtttgatataacttccttaaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4993334 agatgtcttctaacttatgaataaatgtttgatataacttccttaaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttc 4993235  T
Q  201 aacccttcggttattctctcttccttttagcattttcttcaataatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaag 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4993234 aacccttcggttattctctcttccttttagtattttcttcaataatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaag 4993135  T
Q  301 aaatattactatattgatttcttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaa 400  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||| ||||||||||||    
T  4993134 aaatattactatattgattt-ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaa 4993036  T
Q  401 ctaaaggcgccgtgtata 418  Q
    ||||||||| ||| ||||    
T  4993035 ctaaaggcgtcgtatata 4993018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 418 - 528
Target Start/End: Complemental strand, 4975087 - 4974977
Alignment:
Q  418 accctgaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaa 517  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4975087 accctgaaaaacatccttgaggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccca 4974988  T
Q  518 caccatatatt 528  Q
    ||| |||||||    
T  4974987 cacgatatatt 4974977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 418 - 528
Target Start/End: Complemental strand, 4992995 - 4992885
Alignment:
Q  418 accctgaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaa 517  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4992995 accctgaaaaacatccttgaggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccca 4992896  T
Q  518 caccatatatt 528  Q
    ||| |||||||    
T  4992895 cacgatatatt 4992885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 435 - 518
Target Start/End: Complemental strand, 12343143 - 12343060
Alignment:
Q  435 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 518  Q
    ||||||||||  ||| |||| |||||  |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  12343143 tgaggacaacatccatcaaaatacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatccaac 12343060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 407
Target Start/End: Complemental strand, 37559917 - 37559832
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaagg 407  Q
    ||||||||||||||||||||||||||  || || || ||| | |||||||||| |||||||||||||| |||||||||||||||||    
T  37559917 ttttttaaacaacaaattttatttaaaaatgagatccctgtttaagacgaacagagatcggtgaaattgagaatacaaactaaagg 37559832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 436 - 518
Target Start/End: Complemental strand, 7696286 - 7696204
Alignment:
Q  436 gaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 518  Q
    ||||||||| ||||||||| |||||| |||||||||||| | ||| ||||||||||||||||| |||||||| ||||| ||||    
T  7696286 gaggacaacacccaccaaaatacacatcaccacctaaaataaactccttcacgaaaacgaccaatgtaaaaatgatattcaac 7696204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 322 - 411
Target Start/End: Original strand, 33533364 - 33533453
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgcc 411  Q
    ||||| |||||||||||||||||||||   ||| ||||||||||||||||||| |||  ||||||| |||| |||||||| |||||||||    
T  33533364 tttttgaaacaacaaattttatttaacagccagatctctgctcaagacgaacagagactggtgaaactaaggatacaaacaaaaggcgcc 33533453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 322 - 409
Target Start/End: Complemental strand, 1269912 - 1269826
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 409  Q
    ||||||||||||||||||||||||||| ||||  |||||| |||||||||| | ||  |||||||||| |||||||||| ||||||||    
T  1269912 ttttttaaacaacaaattttatttaacaatcaaatctctgttcaagacgaa-agaggccggtgaaattgagaatacaaattaaaggcg 1269826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 322 - 418
Target Start/End: Complemental strand, 29997406 - 29997310
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    ||||||||||||||||||||||| ||| ||| |||||||| | |||||||||| ||| || ||||||| | |||| |||| |||||| |||| ||||    
T  29997406 ttttttaaacaacaaattttattaaacaatctggtctctggtaaagacgaacagagaccgatgaaattgaaaataaaaacaaaaggcaccgtatata 29997310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 468 - 522
Target Start/End: Original strand, 10173368 - 10173422
Alignment:
Q  468 cctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 522  Q
    |||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||    
T  10173368 cctaaaacagacgtcttcatgaaaacgactactgtaaaaacgatatacaacacca 10173422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 522
Target Start/End: Original strand, 41086573 - 41086632
Alignment:
Q  463 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 522  Q
    |||||||||||||||||  ||| |||||| |||||||| |||||||||||||||| ||||    
T  41086573 caccacctaaaacagaccccttaacgaaagcgaccactctaaaaacgatatccaatacca 41086632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 418
Target Start/End: Original strand, 33788246 - 33788341
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    |||||| |||| ||||||||||||||  | ||  |||||||| |||||||||| ||| |||||| |   ||||||||||||||||||||||| ||||    
T  33788246 ttttttgaacagcaaattttatttaaa-accaaatctctgctaaagacgaacagagaccggtgataccgagaatacaaactaaaggcgccgtatata 33788341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 519
Target Start/End: Complemental strand, 34230515 - 34230444
Alignment:
Q  447 ccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaaca 519  Q
    |||||||| |||||  ||||| ||||| ||||||  | |||||||||||||||| ||||||||||||||||||    
T  34230515 ccaccaaaatacacgtcaccatctaaa-cagactcttccacgaaaacgaccactataaaaacgatatccaaca 34230444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 515
Target Start/End: Original strand, 41113525 - 41113573
Alignment:
Q  467 acctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 515  Q
    |||||||||||||| ||||||||||||||| | |||| |||||||||||    
T  41113525 acctaaaacagactccttcacgaaaacgactattgtacaaacgatatcc 41113573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 405
Target Start/End: Original strand, 10173199 - 10173282
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaa 405  Q
    ||||| ||||| ||||||||| ||||| | ||| |  |||||||||||||||| ||||||||||||   | |||||||||||||    
T  10173199 tttttgaaacatcaaattttacttaacaaccagattcctgctcaagacgaacagagatcggtgaaacatataatacaaactaaa 10173282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 518
Target Start/End: Complemental strand, 1269783 - 1269721
Alignment:
Q  456 tacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 518  Q
    |||||| |||||||||||||| | | |||| || |||||||| || |||||||||||||||||    
T  1269783 tacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatccaac 1269721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 418
Target Start/End: Original strand, 22884728 - 22884830
Alignment:
Q  316 gatttcttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgt 415  Q
    ||||| |||||| | || ||||||||||||||  | ||  ||||||||||||||||||| ||| ||  || ||  ||||||||||||||||||| ||| |    
T  22884728 gatttattttttgagcatcaaattttatttaaaaaccaaatctctgctcaagacgaacaaagaccgacgatatagagaatacaaactaaaggcgtcgtat 22884827  T
Q  416 ata 418  Q
    |||    
T  22884828 ata 22884830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 500
Target Start/End: Original strand, 37770415 - 37770469
Alignment:
Q  446 cccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccact 500  Q
    ||||||||| | |||  |||||||||||||||||| |||||||||||| ||||||    
T  37770415 cccaccaaaatccacgtcaccacctaaaacagactccttcacgaaaaccaccact 37770469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 516
Target Start/End: Original strand, 27879936 - 27879988
Alignment:
Q  463 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcca 516  Q
    |||||||||||||||||| ||||| |||||||||| ||| |||||||| |||||    
T  27879936 caccacctaaaacagactccttcaggaaaacgacctctg-aaaaacgaaatcca 27879988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 406
Target Start/End: Complemental strand, 12343266 - 12343182
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaag 406  Q
    ||||||||||| ||||||||||||||| | || | | | | ||||||| |||| ||| ||  |||||| ||||||||||||||||    
T  12343266 ttttttaaacagcaaattttatttaacaaccatggccccgttcaagacaaacagagaccgacgaaattgagaatacaaactaaag 12343182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 426 - 522
Target Start/End: Complemental strand, 37123716 - 37123620
Alignment:
Q  426 aaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 522  Q
    ||||| |||||| |||||| ||||||||| |||||| |||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37123716 aaacacccttgaagacaacacccaccaaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 37123620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 409
Target Start/End: Original strand, 33143578 - 33143659
Alignment:
Q  328 aaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 409  Q
    ||||||||||||||||| ||| | ||| |||||||||||| |||||||| |||||||||| | ||||||||| | |||||||    
T  33143578 aaacaacaaattttattaaacaaccagatctctgctcaaggcgaacataaatcggtgaaactgagaatacaaccaaaaggcg 33143659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 446 - 520
Target Start/End: Complemental strand, 12086556 - 12086482
Alignment:
Q  446 cccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacac 520  Q
    ||||||||| || ||| ||||||||||||||||  | |||| |||||||| ||||||||||||||||| ||||||    
T  12086556 cccaccaaaataaacatcaccacctaaaacagatgtattcaagaaaacgatcactgtaaaaacgatattcaacac 12086482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 435 - 517
Target Start/End: Original strand, 25594304 - 25594385
Alignment:
Q  435 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaa 517  Q
    |||||||||| ||||||| | || ||| ||| |||||||||| ||| |||||| ||||||||||||| |||||||||||||||    
T  25594304 tgaggacaacacccaccacaataaacatcactacctaaaacatactccttcac-aaaacgaccactgaaaaaacgatatccaa 25594385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 465 - 522
Target Start/End: Original strand, 28937498 - 28937555
Alignment:
Q  465 ccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 522  Q
    |||||||||||||||  ||||||||||  |||||||||||||||||||||||| ||||    
T  28937498 ccacctaaaacagaccccttcacgaaagtgaccactgtaaaaacgatatccaatacca 28937555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 418
Target Start/End: Original strand, 14280169 - 14280265
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    ||||| |||||  |||| ||||| ||| ||||| ||| ||||||||||||||| |||||| ||||| | | |||||||| |||||||||||| ||||    
T  14280169 tttttgaaacagtaaatattattaaacaatcagatctttgctcaagacgaacaaagatcgatgaaactgataatacaaattaaaggcgccgtatata 14280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 413
Target Start/End: Original strand, 14754942 - 14754994
Alignment:
Q  361 gctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgt 413  Q
    |||||||||||||| | ||| |||||||| |||||||||||||||||||||||    
T  14754942 gctcaagacgaacaaatatcagtgaaattgagaatacaaactaaaggcgccgt 14754994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 510
Target Start/End: Complemental strand, 32010072 - 32010012
Alignment:
Q  450 ccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacga 510  Q
    ||||| || ||| |||||||||||||||||| |||||||||||||||| ||| ||||||||    
T  32010072 ccaaaataaacatcaccacctaaaacagactccttcacgaaaacgacctctgaaaaaacga 32010012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 523
Target Start/End: Original strand, 33143734 - 33143794
Alignment:
Q  463 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccat 523  Q
    |||||||||||||| ||| |||||||||||| ||||||| | |||||||||||||| ||||    
T  33143734 caccacctaaaacaaactccttcacgaaaaccaccactgaacaaacgatatccaaccccat 33143794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 410
Target Start/End: Complemental strand, 25648103 - 25648056
Alignment:
Q  363 tcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgc 410  Q
    |||||||||||| |||||||||||| ||||||||||||| ||||||||    
T  25648103 tcaagacgaacagagatcggtgaaactaagaatacaaacaaaaggcgc 25648056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 385
Target Start/End: Complemental strand, 32010248 - 32010185
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtga 385  Q
    ||||| ||||||||||||||||||||| | ||| || || ||||||||||||| ||||||||||    
T  32010248 tttttgaaacaacaaattttatttaacaaccagatccctactcaagacgaacagagatcggtga 32010185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 523
Target Start/End: Original strand, 14755047 - 14755105
Alignment:
Q  465 ccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccat 523  Q
    |||||||||||||||  |||||||||| |||||| ||||||||||||||| || |||||    
T  14755047 ccacctaaaacagaccccttcacgaaagcgaccattgtaaaaacgatatctaataccat 14755105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 514
Target Start/End: Original strand, 50518833 - 50518922
Alignment:
Q  424 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatc 514  Q
    ||||||| || ||||||| || |||| |||| |||||  ||||| |||||||||||| ||||||| | || ||||||||||||||||||||    
T  50518833 aaaaacacccatgaggaccacacccaacaaaatacacctcaccatctaaaacagactccttcacg-ataccaccactgtaaaaacgatatc 50518922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 46358002 - 46358054
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaaca 374  Q
    ||||| ||||||||||||||||||||| | ||| || ||||||||||||||||    
T  46358002 tttttgaaacaacaaattttatttaacaaccagatccctgctcaagacgaaca 46358054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 518
Target Start/End: Complemental strand, 4171081 - 4170986
Alignment:
Q  424 aaaaacatccttgaggacaacccccaccaaat-tacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 518  Q
    ||||||||| ||||||||||| ||||| |||  || ||  || ||||||||| ||||| ||||||||||| ||||| |||| ||| ||||||||||    
T  4171081 aaaaacatcattgaggacaacacccacaaaaaatatacgtcatcacctaaaatagactccttcacgaaaatgaccattgtataaatgatatccaac 4170986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 522
Target Start/End: Complemental strand, 7105139 - 7105080
Alignment:
Q  463 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 522  Q
    |||||||||||||||||||||||| |||||| | |||| |||||||  |||||| |||||    
T  7105139 caccacctaaaacagacttcttcaagaaaacaagcactataaaaacagtatccaccacca 7105080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 518
Target Start/End: Complemental strand, 14194256 - 14194175
Alignment:
Q  435 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 518  Q
    ||||||| || ||||||||| |||||  |||||||||||||||||| | |||||||| || |||||| || |||||||||||||    
T  14194256 tgaggaccacacccaccaaaatacacgtcaccacctaaaacagactccatcacgaaatcg-ccactg-aataacgatatccaac 14194175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 513
Target Start/End: Original strand, 4463881 - 4463931
Alignment:
Q  463 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatat 513  Q
    |||||||||||| | ||||||||| || | |||||||||||||||||||||    
T  4463881 caccacctaaaataaacttcttcatgacaccgaccactgtaaaaacgatat 4463931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 517
Target Start/End: Original strand, 48893097 - 48893190
Alignment:
Q  424 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaa 517  Q
    ||||||| || ||| |||||| ||||||||| ||||   |||||||||||| ||||| ||| || |||||||  || |||||||| ||||||||    
T  48893097 aaaaacacccctgaagacaacacccaccaaaatacatgtcaccacctaaaagagactcctttacaaaaacgattacggtaaaaacaatatccaa 48893190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 407
Target Start/End: Original strand, 50518709 - 50518794
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaagg 407  Q
    ||||| ||||| ||||||||||| ||| ||  | || |||||||||||||||| |||  ||||||| | ||||||||||| |||||    
T  50518709 tttttgaaacatcaaattttattaaacaatttgatccctgctcaagacgaacagagactggtgaaactgagaatacaaacaaaagg 50518794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 418
Target Start/End: Complemental strand, 4171205 - 4171109
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    |||||||| ||||||||| |||| ||| |  |  || ||||| |||||||||| ||| |||||||| | ||||||||||| ||||||| ||| ||||    
T  4171205 ttttttaagcaacaaattctattaaacaactaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatata 4171109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 522
Target Start/End: Complemental strand, 14879708 - 14879676
Alignment:
Q  490 aaacgaccactgtaaaaacgatatccaacacca 522  Q
    |||||||||||| ||||||||||||||||||||    
T  14879708 aaacgaccactgaaaaaacgatatccaacacca 14879676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 514
Target Start/End: Complemental strand, 27399270 - 27399194
Alignment:
Q  435 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatc 514  Q
    |||||||||| ||||||||| || ||| || |||||||||||| || |||||||  |||||||||||  |||||||||||    
T  27399270 tgaggacaacacccaccaaaataaacatcatcacctaaaacaggctccttcacg-caacgaccactg--aaaacgatatc 27399194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 409
Target Start/End: Complemental strand, 37123824 - 37123744
Alignment:
Q  329 aacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 409  Q
    ||||| |||||||||| ||| || |  ||||||||||||||||||  ||| || ||||| | ||||||||||| |||||||    
T  37123824 aacaagaaattttattaaacaattaaatctctgctcaagacgaactgagaccgatgaaactgagaatacaaacaaaaggcg 37123744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 424 - 515
Target Start/End: Original strand, 10248311 - 10248402
Alignment:
Q  424 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 515  Q
    ||||||| ||||||||||||| ||| ||||| |||||  |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||    
T  10248311 aaaaacacccttgaggacaacacccgccaaaatacacgtcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcc 10248402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 424 - 521
Target Start/End: Original strand, 17656480 - 17656578
Alignment:
Q  424 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacg-aaaacgaccactgtaaaaacgatatccaacacc 521  Q
    ||||||| ||||||||||||| ||||||||| | |||  ||||| |||||||||||| ||||| | ||||||||||||| |||||||||||||||||||    
T  17656480 aaaaacacccttgaggacaacacccaccaaaattcacgtcaccatctaaaacagactccttcaagaaaaacgaccactgcaaaaacgatatccaacacc 17656578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 322 - 524
Target Start/End: Original strand, 43312275 - 43312483
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtat---- 417  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||| | ||| || ||||| | ||||| |  |||||||||||| | |||        
T  43312275 ttttttaaacaacaaattttatttaaccacctggtctctgctcaagacgaatagagaccgatgaaactgagaatgc--actaaaggcgccatatataggc 43312372  T
Q  418 -----accctgaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgata 512  Q
         | ||| ||||||| |  |||  ||||| |||| |||| ||||   ||||||||||| |||||| || ||| ||||||||||||||||||||||||    
T  43312373 ggaacatcctaaaaaacaccgctga-aacaacacccatcaaaatacatgtcaccacctaaatcagactcctacacaaaaacgaccactgtaaaaacgata 43312471  T
Q  513 tccaacaccata 524  Q
    ||| ||||||||    
T  43312472 tcccacaccata 43312483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 322 - 418
Target Start/End: Original strand, 10248185 - 10248281
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    ||||| ||||||||||||||||||||||||||||||   |||||||||||||  | |||  ||||| | ||||||||| ||||||||| ||| ||||    
T  10248185 tttttgaaacaacaaattttatttaaccatcaggtccgggctcaagacgaactgaaatcattgaaactgagaatacaacctaaaggcgtcgtatata 10248281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 418
Target Start/End: Original strand, 12197695 - 12197791
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    |||||| ||||  |||||||||||||| |  || ||| ||||||||||||| | |||||||||||    ||||||||||||||||||| ||| ||||    
T  12197695 tttttttaacagtaaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctata 12197791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 418
Target Start/End: Original strand, 12442123 - 12442219
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    |||||| ||||  |||||||||||||| |  || ||| ||||||||||||| | |||||||||||    ||||||||||||||||||| ||| ||||    
T  12442123 tttttttaacagtaaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctata 12442219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 521
Target Start/End: Original strand, 2273838 - 2273887
Alignment:
Q  472 aaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacc 521  Q
    ||||||||| ||||||||||||| | || ||||||||||||||| |||||    
T  2273838 aaacagactccttcacgaaaacgccaaccgtaaaaacgatatcccacacc 2273887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 2613167 - 2613224
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagat 379  Q
    ||||| ||||| ||||||||||||||| ||||| || || ||||||||||| ||||||    
T  2613167 tttttcaaacagcaaattttatttaacaatcagatccctactcaagacgaatatagat 2613224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 515
Target Start/End: Original strand, 22325886 - 22325931
Alignment:
Q  470 taaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 515  Q
    ||||||||||| ||| || |||||||||| ||||||||||||||||    
T  22325886 taaaacagactccttaacaaaaacgaccattgtaaaaacgatatcc 22325931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 517
Target Start/End: Original strand, 8862380 - 8862460
Alignment:
Q  437 aggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaa 517  Q
    |||||||| ||||| ||| |||||  ||||||||||||| ||||  | ||||| ||| |||| ||||||||| ||||||||    
T  8862380 aggacaacacccacaaaaatacacgtcaccacctaaaactgactcttacacgagaacaaccattgtaaaaacaatatccaa 8862460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 322 - 409
Target Start/End: Original strand, 11439640 - 11439727
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 409  Q
    ||||||||||||||||||||||| ||| | ||| ||||||||||||||||||| |||||||||||| | ||||||||||| |||||||    
T  11439640 ttttttaaacaacaaattttattaaacaaccagatctctgctcaagacgaacaaagatcggtgaaaatgagaatacaaacaaaaggcg 11439727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 436 - 522
Target Start/End: Complemental strand, 32882691 - 32882605
Alignment:
Q  436 gaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 522  Q
    ||||||||| ||||||||| || ||| |||| |||||||| |||| |||||||||||||| ||||||||| ||||||||||||||||    
T  32882691 gaggacaacacccaccaaaatatacatcaccgcctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacacca 32882605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 435 - 520
Target Start/End: Complemental strand, 34775197 - 34775112
Alignment:
Q  435 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacac 520  Q
    |||||||||| ||||||||| |||||  || ||||||||||||||| ||||||||||||||| ||||||||||||| |||| ||||    
T  34775197 tgaggacaacacccaccaaaatacacgtcatcacctaaaacagactccttcacgaaaacgacaactgtaaaaacgaaatcccacac 34775112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 418
Target Start/End: Complemental strand, 34775326 - 34775237
Alignment:
Q  328 aaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||| ||| || | ||  | ||||||||||||||||||||||| ||||    
T  34775326 aaacaacaaattttatttaatcatcaggtc-ctgctcaagacgaacaaagaccgataaagctgagaatacaaactaaaggcgccgtatata 34775237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 4431136 - 4431045
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgt 413  Q
    ||||| ||||| ||||||||||| ||| | ||  ||||||||||||||||| | ||| |||||||||| ||||||||||| |||||||||||    
T  4431136 tttttgaaacagcaaattttattaaacaaacatatctctgctcaagacgaatagagaccggtgaaattgagaatacaaacaaaaggcgccgt 4431045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 407
Target Start/End: Original strand, 12636079 - 12636164
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaagg 407  Q
    ||||||||||||||||||||||||||| ||| |||| || ||||||||||||| ||| |||| ||| | | ||||||| |||||||    
T  12636079 ttttttaaacaacaaattttatttaactatcgggtccctactcaagacgaacagagaccggtaaaactgataatacaacctaaagg 12636164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 499
Target Start/End: Complemental strand, 46768518 - 46768437
Alignment:
Q  418 accctgaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccac 499  Q
    ||||| ||||||| ||  ||||||||| ||||||||| | |||  |||||||||||||||||| ||||||||||||||||||    
T  46768518 accctaaaaaacacccccgaggacaacacccaccaaaattcacgtcaccacctaaaacagactccttcacgaaaacgaccac 46768437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 322 - 418
Target Start/End: Original strand, 9312960 - 9313056
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    ||||||||||||||||||||||| ||| |  || ||||||||||||||||||| ||| |||||||| | | ||||||| | ||||||| ||| ||||    
T  9312960 ttttttaaacaacaaattttattaaacaacgagatctctgctcaagacgaacagagaccggtgaaacttataatacaatcaaaaggcgtcgtatata 9313056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 424 - 518
Target Start/End: Original strand, 10785206 - 10785300
Alignment:
Q  424 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 518  Q
    ||||||| ||||||||||||| |||| |||| ||||    | ||| ||||||||||| |||||||||||||||  ||| ||||||||||||||||    
T  10785206 aaaaacacccttgaggacaacacccatcaaaatacatgttatcacttaaaacagactccttcacgaaaacgacatctgaaaaaacgatatccaac 10785300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 456 - 518
Target Start/End: Original strand, 31290796 - 31290858
Alignment:
Q  456 tacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 518  Q
    |||||| ||||||||||| |||||| |||| ||||||||||||||||||||| |||| |||||    
T  31290796 tacacatcaccacctaaatcagactccttcgcgaaaacgaccactgtaaaaatgatagccaac 31290858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 418
Target Start/End: Original strand, 376427 - 376522
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    ||||||||||| ||||||||||| ||||| || ||| |||||||||||||||| |||  | |||||   |||||||||| |||||||||||| ||||    
T  376427 ttttttaaacagcaaattttatt-aaccaccacgtccctgctcaagacgaacagagacggatgaaacagagaatacaaagtaaaggcgccgtatata 376522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 418
Target Start/End: Complemental strand, 27102643 - 27102547
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    ||||||||||| ||||||||||| ||| | ||| |||||| |||||||||||| |||  ||||||  | ||||||||||| ||||| ||||| ||||    
T  27102643 ttttttaaacagcaaattttattaaacaaccagatctctgttcaagacgaacaaagactggtgaacctgagaatacaaacaaaaggtgccgtatata 27102547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 401
Target Start/End: Original strand, 7451881 - 7451960
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaac 401  Q
    ||||||||||| ||||| ||||| ||| |  || ||||||||||||||||||| ||| |||||||| | |||||||||||    
T  7451881 ttttttaaacagcaaatattattaaacaactagatctctgctcaagacgaacagagaccggtgaaactgagaatacaaac 7451960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 447 - 522
Target Start/End: Original strand, 11439786 - 11439861
Alignment:
Q  447 ccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 522  Q
    |||||||| |||||  ||||||||||||||||   |||||||||| | ||||| ||||||| ||||||||||||||    
T  11439786 ccaccaaaatacacgtcaccacctaaaacagatcccttcacgaaagcaaccaccgtaaaaatgatatccaacacca 11439861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 516
Target Start/End: Complemental strand, 16577579 - 16577504
Alignment:
Q  441 caacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcca 516  Q
    |||| ||||||||| || ||| || |||||||||||||||  ||||||||||||||||||  ||||| ||||||||    
T  16577579 caacacccaccaaaataaacatcatcacctaaaacagactctttcacgaaaacgaccactcaaaaaatgatatcca 16577504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 514
Target Start/End: Original strand, 32863290 - 32863381
Alignment:
Q  423 gaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatc 514  Q
    |||||||| ||  ||||||||| ||||||||  |||||  |||| ||||||||||| | || |||||||||||||| |||||| ||||||||    
T  32863290 gaaaaacacccaagaggacaacacccaccaacatacacgtcaccgcctaaaacagaatcctccacgaaaacgaccattgtaaacacgatatc 32863381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 405
Target Start/End: Original strand, 10785081 - 10785164
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaa 405  Q
    ||||||||||| ||||||| ||||||| | ||| || |||||||||||||| | |||  ||| ||| | |||||||||||||||    
T  10785081 ttttttaaacatcaaatttcatttaacaaccagatccctgctcaagacgaatagagacgggtaaaactgagaatacaaactaaa 10785164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 506
Target Start/End: Complemental strand, 42374479 - 42374401
Alignment:
Q  427 aacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaa 506  Q
    |||| ||||| ||||||||||||||||  || ||| |||||||||||||| | | ||||||| |||||||||||| ||||    
T  42374479 aacacccttggggacaacccccaccaagataaacatcaccacctaaaacaaattccttcacg-aaacgaccactgaaaaa 42374401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 46768600 - 46768549
Alignment:
Q  360 tgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgcc 411  Q
    ||||||||||||||| |||| ||||||||| || |||||||| |||||||||    
T  46768600 tgctcaagacgaacagagattggtgaaattgagcatacaaacaaaaggcgcc 46768549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 424 - 522
Target Start/End: Original strand, 14302188 - 14302286
Alignment:
Q  424 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 522  Q
    ||||||| || ||| |||||| ||||||||| |||||  |||||||||||||||| | |||| |||||||||||| |||||||||||||||||||||||    
T  14302188 aaaaacacccctgatgacaacacccaccaaaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacacca 14302286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 418 - 521
Target Start/End: Original strand, 26045702 - 26045805
Alignment:
Q  418 accctgaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaa 517  Q
    ||||| ||||||  || |||||||||| ||||||||| | |||  |||||||||||||||||||||||| ||||| |||||| |||||||||| ||||||    
T  26045702 accctaaaaaacgcccctgaggacaacacccaccaaaattcacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaa 26045801  T
Q  518 cacc 521  Q
    ||||    
T  26045802 cacc 26045805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 21391898 - 21391988
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccg 412  Q
    ||||| |||||||||||||||||||  | ||||||| |||||||||||||||| ||| |||||||| | ||||||||||||||||| ||||    
T  21391898 tttttgaaacaacaaattttatttattcttcaggtccctgctcaagacgaacaaagaccggtgaaactgagaatacaaactaaaggtgccg 21391988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 439 - 522
Target Start/End: Original strand, 33109957 - 33110040
Alignment:
Q  439 gacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 522  Q
    |||||| ||||||||| |||||  || ||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||||    
T  33109957 gacaacacccaccaaaatacacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaaaacgatatccaatacca 33110040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 418
Target Start/End: Original strand, 26405168 - 26405264
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    |||||| |||||||||||||||| ||| | ||| | ||||||||||||||||| ||| |||||||| | ||||||||||| ||||||| ||| ||||    
T  26405168 tttttttaacaacaaattttattaaacaaccagatttctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaggcgtcgtatata 26405264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 334 - 418
Target Start/End: Original strand, 13953878 - 13953964
Alignment:
Q  334 caaattttatttaaccatcaggtctctgctcaagacgaacatagatcg--gtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    ||||||||||||||||  ||||||||||||||||||||||| ||| ||  |||||| | ||| ||||||||||||||||||| ||||    
T  13953878 caaattttatttaacctccaggtctctgctcaagacgaacagagaccggtgtgaaactgagagtacaaactaaaggcgccgtatata 13953964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 418 - 493
Target Start/End: Complemental strand, 30097675 - 30097600
Alignment:
Q  418 accctgaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaac 493  Q
    ||||| |||||||||| ||| |||||| ||||||||| |||||  |||||||||||||||||| ||||||||||||    
T  30097675 accctaaaaaacatccatgatgacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 30097600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 322 - 400
Target Start/End: Original strand, 7391617 - 7391695
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaa 400  Q
    |||||||| |||||||||||||| || |||||| |||||| |||||||||||| ||| |||||||| | ||||||||||    
T  7391617 ttttttaatcaacaaattttattaaatcatcagatctctgttcaagacgaacagagaccggtgaaaatgagaatacaaa 7391695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 424 - 518
Target Start/End: Complemental strand, 8297808 - 8297714
Alignment:
Q  424 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 518  Q
    ||||||| || |||||| |||  |||||||| |||||| |||||||||||||| ||| ||||| ||||| ||||| |||||||||||| ||||||    
T  8297808 aaaaacacccctgaggataacatccaccaaaatacacatcaccacctaaaacacactccttcaagaaaaagaccaatgtaaaaacgatttccaac 8297714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 436 - 518
Target Start/End: Complemental strand, 10175005 - 10174923
Alignment:
Q  436 gaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 518  Q
    ||||||||| ||||||||| |||||   ||||||||||||||||| ||||   ||||||||||| ||||||||||||||||||    
T  10175005 gaggacaacacccaccaaagtacacgtaaccacctaaaacagactccttctaaaaaacgaccacggtaaaaacgatatccaac 10174923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 465 - 523
Target Start/End: Original strand, 33258665 - 33258723
Alignment:
Q  465 ccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccat 523  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||||||||||| |||||    
T  33258665 ccacctaaaacagatctcttcacgaaagcgaccactgtaaaaacgatatccaataccat 33258723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 322 - 400
Target Start/End: Complemental strand, 8297931 - 8297853
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaa 400  Q
    |||||| |||| ||||||||||| ||| ||||| ||||| ||||||||||||| ||| |||||||| | ||||||||||    
T  8297931 tttttttaacagcaaattttattgaacaatcagatctctactcaagacgaacagagaccggtgaaactgagaatacaaa 8297853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 7682879 - 7682806
Alignment:
Q  435 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaac 508  Q
    |||| ||||| ||||||||| |||||| |||||||||||| |||||  ||||| ||||||||||| ||||||||    
T  7682879 tgagaacaacacccaccaaaatacacatcaccacctaaaatagactctttcacaaaaacgaccaccgtaaaaac 7682806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 465 - 522
Target Start/End: Complemental strand, 25992306 - 25992249
Alignment:
Q  465 ccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 522  Q
    |||||||||||||||  |||||||||| | ||||||||||||||||||||||| ||||    
T  25992306 ccacctaaaacagaccccttcacgaaagcaaccactgtaaaaacgatatccaatacca 25992249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 517
Target Start/End: Original strand, 26405292 - 26405384
Alignment:
Q  424 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaa 517  Q
    ||||||| || ||||||||||  |||||||| |||||  |||||||||||||||||||||||| | ||| || |||||| ||||| ||||||||    
T  26405292 aaaaacacccctgaggacaacaaccaccaaaatacacgtcaccacctaaaacagacttcttcatggaaatga-cactgttaaaaccatatccaa 26405384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 412
Target Start/End: Complemental strand, 5187369 - 5187313
Alignment:
Q  356 tctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccg 412  Q
    ||||||||||||| || || |||||||||||||| ||||||||||| ||||||||||    
T  5187369 tctctgctcaagaagagcagagatcggtgaaattgagaatacaaacaaaaggcgccg 5187313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 418
Target Start/End: Complemental strand, 25992450 - 25992366
Alignment:
Q  334 caaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    ||||| ||||| ||| | ||| ||||||||||||||||||| ||| |||||||| | | ||||||||| ||||||||||| ||||    
T  25992450 caaatattattaaacaaccagatctctgctcaagacgaacagagaccggtgaaaatgataatacaaacaaaaggcgccgtatata 25992366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 515
Target Start/End: Original strand, 13954001 - 13954084
Alignment:
Q  432 ccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 515  Q
    ||||||||||||| ||||||||| ||||   || | |||||||||||||| |||| ||| ||||| ||||||||||| ||||||    
T  13954001 ccttgaggacaactcccaccaaaatacatgtcatctcctaaaacagactttttcatgaagacgactactgtaaaaacaatatcc 13954084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 406
Target Start/End: Original strand, 33109822 - 33109906
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaag 406  Q
    |||||| |||| ||||| ||||| ||| ||||  |||||||| |||||||||||| || ||||||| | ||||||||||| ||||    
T  33109822 tttttttaacagcaaatattattaaacaatcaaatctctgcttaagacgaacataaattggtgaaactgagaatacaaacaaaag 33109906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 493
Target Start/End: Original strand, 7195059 - 7195114
Alignment:
Q  438 ggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaac 493  Q
    ||||||| ||||||||| |||||  |||||||||||||||||| |||||| |||||    
T  7195059 ggacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacaaaaac 7195114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 515
Target Start/End: Original strand, 21398064 - 21398155
Alignment:
Q  424 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 515  Q
    ||||||| || |||||||||| |  || ||| |||||  ||||| |||||||||||  |||||||||||| |||  ||||||||||||||||    
T  21398064 aaaaacacccctgaggacaacacttacaaaaatacacgtcaccatctaaaacagacgccttcacgaaaacaacctttgtaaaaacgatatcc 21398155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 396
Target Start/End: Original strand, 7194921 - 7194995
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaata 396  Q
    ||||||||||| ||||||||||| ||| | ||| || || ||||||||||||| |||||| ||||| | ||||||    
T  7194921 ttttttaaacagcaaattttattaaacaaccagatccctactcaagacgaacaaagatcgatgaaactgagaata 7194995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 522
Target Start/End: Original strand, 7161793 - 7161858
Alignment:
Q  457 acacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 522  Q
    ||||| ||| |||||||||||||| |||||| ||||| | ||||||||| ||||| |||| |||||    
T  7161793 acacatcactacctaaaacagactccttcacaaaaacaagcactgtaaacacgatttccaccacca 7161858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 516
Target Start/End: Original strand, 39183951 - 39184038
Alignment:
Q  427 aacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcca 516  Q
    |||| ||||||||||||| ||||| ||| || | | ||||||||||||||||||   ||||| |||||||||||| ||||||| ||||||    
T  39183951 aacacccttgaggacaacacccactaaaataaagatcaccacctaaaacagactctatcacg-aaacgaccactg-aaaaacggtatcca 39184038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 30097758 - 30097698
Alignment:
Q  358 tctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    |||||| |||||||||| ||| |||| || | ||||||||||||||||| |||||| ||||    
T  30097758 tctgcttaagacgaacaaagaccggtaaattaaagaatacaaactaaagacgccgtatata 30097698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 322 - 517
Target Start/End: Complemental strand, 52009286 - 52009083
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata--- 418  Q
    ||||| ||||| ||||||||||| ||| | ||| || |||| ||||||||| | |||||||||||| | || || |||||  |||||||||| ||||       
T  52009286 tttttgaaacagcaaattttattaaactaccagatccctgcccaagacgaatagagatcggtgaaactgagcatgcaaacataaggcgccgtatataggc 52009187  T
Q  419 ------ccctgaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgata 512  Q
          |||| ||||||| || ||||||||||||| ||||||   ||| ||||||||||||||||||| | ||| | || ||||||||||||||||||||    
T  52009186 ggaacaccctaaaaaacacccctgaggacaacccc-accaaaaatcacgccaccacctaaaacagactccgtcatggaagcgaccactgtaaaaacgata 52009088  T
Q  513 tccaa 517  Q
    |||||    
T  52009087 tccaa 52009083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 446 - 515
Target Start/End: Original strand, 22810927 - 22810996
Alignment:
Q  446 cccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 515  Q
    ||||||||| |||||  |||| ||||||||||||| |||||||||| |||||||||||||||||||||||    
T  22810927 cccaccaaaatacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcc 22810996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 435 - 521
Target Start/End: Complemental strand, 49747853 - 49747768
Alignment:
Q  435 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacc 521  Q
    |||||||||| ||||||||| | ||   ||||||||||||||||||  |||||||||||||||| ||||||||||| ||||||||||    
T  49747853 tgaggacaacacccaccaaaattcatgtcaccacctaaaacagactctttcacgaaaacgaccattgtaaaaacga-atccaacacc 49747768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 446 - 519
Target Start/End: Original strand, 19311132 - 19311205
Alignment:
Q  446 cccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaaca 519  Q
    ||||||||| |||||  |||||||  ||||||| | |||||||||||||| |||||||||||||||||||||||    
T  19311132 cccaccaaaatacacgtcaccaccataaacagattccttcacgaaaacgagcactgtaaaaacgatatccaaca 19311205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 322 - 418
Target Start/End: Complemental strand, 42719617 - 42719521
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    |||||||| |||||||||||||| ||| ||||  || |||||||||||||| | ||| |||||||| | ||||||||||| |||| |||||| ||||    
T  42719617 ttttttaagcaacaaattttattaaacaatcaaatccctgctcaagacgaatagagaccggtgaaactgagaatacaaacaaaagacgccgtatata 42719521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 518
Target Start/End: Original strand, 41117723 - 41117806
Alignment:
Q  435 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 518  Q
    |||||||||| ||||||||| |||| | ||||||||| ||||||||  | ||||||||| |||  |||||||||||||||||||    
T  41117723 tgaggacaacacccaccaaaatacatatcaccacctagaacagactcatgcacgaaaacaaccgttgtaaaaacgatatccaac 41117806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 53823048 - 53823123
Alignment:
Q  324 ttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaa 399  Q
    |||||||||||| |||||||||||||| || |||  ||||||| ||||||| |||||||| ||||| |||||||||    
T  53823048 ttttaaacaacatattttatttaaccaccatgtcaatgctcaaaacgaacagagatcggtaaaattgagaatacaa 53823123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 436 - 518
Target Start/End: Original strand, 38636990 - 38637072
Alignment:
Q  436 gaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 518  Q
    ||||||||| ||||| ||| ||||   |||||||||||||| ||| |||||||||||| ||| ||||||||| ||||||||||    
T  38636990 gaggacaacacccacgaaaatacatgtcaccacctaaaacaaactccttcacgaaaacaaccgctgtaaaaatgatatccaac 38637072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 467 - 523
Target Start/End: Complemental strand, 19673392 - 19673336
Alignment:
Q  467 acctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccat 523  Q
    |||| |||||||| |||||||||||| ||||||||||||| | ||||||||||||||    
T  19673392 acctcaaacagacgtcttcacgaaaatgaccactgtaaaagcaatatccaacaccat 19673336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 519
Target Start/End: Complemental strand, 25753499 - 25753415
Alignment:
Q  435 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaaca 519  Q
    |||||||||| ||||||||| ||||   || ||||||||||| ||| ||||||||||| | ||||||||||| || |||||||||    
T  25753499 tgaggacaacacccaccaaaatacaagtcatcacctaaaacaaactccttcacgaaaagggccactgtaaaatcggtatccaaca 25753415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 401
Target Start/End: Original strand, 41117588 - 41117667
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaac 401  Q
    ||||| ||||||||||||||||| ||| |  || ||||||||||||||||||| |||  ||||||||| ||| |||||||    
T  41117588 tttttgaaacaacaaattttattaaacaactagatctctgctcaagacgaacagagacaggtgaaattgagactacaaac 41117667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 418
Target Start/End: Complemental strand, 9262904 - 9262808
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    ||||| ||||| ||||||||||| ||| | ||  || | |||||||||||||| ||| || ||||| | ||||||||||| ||||||||||| ||||    
T  9262904 tttttaaaacagcaaattttattaaacaaccaaatccccgctcaagacgaacaaagaccgatgaaactgagaatacaaacaaaaggcgccgtatata 9262808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 522
Target Start/End: Original strand, 16832775 - 16832862
Alignment:
Q  435 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaa-cgaccactgtaaaaacgatatccaacacca 522  Q
    |||||||||| |||||||||| | ||  |||||||||||||| | | || |||||||| ||||| ||||||||| ||||||||||||||    
T  16832775 tgaggacaacacccaccaaataa-acgtcaccacctaaaacatattcctgcacgaaaaacgaccgctgtaaaaaagatatccaacacca 16832862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 523
Target Start/End: Original strand, 19815009 - 19815065
Alignment:
Q  467 acctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccat 523  Q
    |||| |||||||| |||||||||||| |||||| ||||||| ||||||||| |||||    
T  19815009 acctcaaacagacgtcttcacgaaaatgaccacggtaaaaatgatatccaataccat 19815065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 418
Target Start/End: Original strand, 22810830 - 22810888
Alignment:
Q  359 ctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    |||||||||||||||| |||  ||||||||| ||||||||||| ||||||||||| ||||    
T  22810830 ctgctcaagacgaacagagactggtgaaattgagaatacaaac-aaaggcgccgtatata 22810888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 522
Target Start/End: Original strand, 39420803 - 39420878
Alignment:
Q  447 ccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 522  Q
    |||||||| |||||  ||||| ||||||| |||| || ||||| ||| ||||| ||| ||||||||||||||||||    
T  39420803 ccaccaaaatacacgtcaccatctaaaactgactcctacacgagaacaaccaccgtataaacgatatccaacacca 39420878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 516
Target Start/End: Complemental strand, 48098647 - 48098580
Alignment:
Q  446 cccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcca 516  Q
    |||||||||| ||||  ||||||||||||||  |||  |||| ||||||||||||||||||||||||||||    
T  48098647 cccaccaaat-acacgtcaccacctaaaacactctt--tcacaaaaacgaccactgtaaaaacgatatcca 48098580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 410
Target Start/End: Complemental strand, 28967300 - 28967248
Alignment:
Q  358 tctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgc 410  Q
    ||||||||||||||||| ||||||||||||   | ||||||||| ||||||||    
T  28967300 tctgctcaagacgaacagagatcggtgaaacagataatacaaacgaaaggcgc 28967248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 424 - 518
Target Start/End: Original strand, 24324542 - 24324637
Alignment:
Q  424 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacg-aaaacgaccactgtaaaaacgatatccaac 518  Q
    ||||||| ||||||||||||| | ||||||| |||||  |||||| ||||||||||| ||||||| |||||||||| ||||| |||||||||||||    
T  24324542 aaaaacacccttgaggacaacactcaccaaaatacacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaagaacgatatccaac 24324637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 418
Target Start/End: Original strand, 6726045 - 6726135
Alignment:
Q  328 aaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    ||||||||||||||||| ||| | ||| ||||||||||||||||||| |||||||||||| | ||||||||||| |||  |||||| ||||    
T  6726045 aaacaacaaattttattaaacaaccagatctctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaaacgccgtatata 6726135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 435 - 513
Target Start/End: Complemental strand, 23983530 - 23983453
Alignment:
Q  435 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatat 513  Q
    |||||||||| ||||||||| || ||||||||||||||||||||||  ||||||||||| ||||||| |||||||||||    
T  23983530 tgaggacaacacccaccaaaataaacaccaccacctaaaacagactcattcacgaaaacaaccactg-aaaaacgatat 23983453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 514
Target Start/End: Complemental strand, 1321109 - 1321041
Alignment:
Q  447 ccaccaaattacacaccaccacctaaaacagacttc-ttcacgaaaacgaccactgtaaaaacgatatc 514  Q
    |||||||| |||||| |||||||||||||||||  | ||||||||| | ||||||||||||||||||||    
T  1321109 ccaccaaaatacacatcaccacctaaaacagacccctttcacgaaagcaaccactgtaaaaacgatatc 1321041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 506
Target Start/End: Original strand, 28534284 - 28534354
Alignment:
Q  435 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaa 506  Q
    |||||||||| ||||||||| || ||| ||||||||||||||||||  |||||| |||||||||||| ||||    
T  28534284 tgaggacaacacccaccaaaataaacatcaccacctaaaacagactctttcacg-aaacgaccactgaaaaa 28534354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 410
Target Start/End: Complemental strand, 33719413 - 33719338
Alignment:
Q  335 aaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgc 410  Q
    |||||||||| ||| | ||| || |||||||||||||||| |||||||||||| | ||||||||||| || |||||    
T  33719413 aaattttattaaacaaccagatccctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaacggcgc 33719338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 520
Target Start/End: Complemental strand, 33719292 - 33719206
Alignment:
Q  435 tgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaa-cgaccactgtaaaaacgatatccaacac 520  Q
    |||||||||| ||||||||| |||  | |||| |||||||| |||| |||||| |||| ||||| ||||||||| ||||||||||||    
T  33719292 tgaggacaacacccaccaaaatacctatcaccgcctaaaaccgactccttcacaaaaaacgacctctgtaaaaatgatatccaacac 33719206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 409
Target Start/End: Complemental strand, 44756022 - 44755941
Alignment:
Q  328 aaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 409  Q
    ||||||||||||||||| ||| |  || || |||||||||||||||  ||||| |||||| |||| |||||||| |||||||    
T  44756022 aaacaacaaattttattaaacaactagatccctgctcaagacgaacgaagatcagtgaaactaagcatacaaacaaaaggcg 44755941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 418
Target Start/End: Original strand, 6716356 - 6716452
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    ||||||||||| ||||||||||||||||| || ||| ||||||||||| |||  |||  | |||||   |||||||||| |||||| ||||| ||||    
T  6716356 ttttttaaacatcaaattttatttaaccaccaagtccctgctcaagacaaaccgagacagatgaaacagagaatacaaattaaaggggccgtatata 6716452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 514
Target Start/End: Original strand, 6716522 - 6716571
Alignment:
Q  463 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatc 514  Q
    ||||||||||||||  || |||||||||||||||||||||||||||| ||||    
T  6716522 caccacctaaaaca--ctccttcacgaaaacgaccactgtaaaaacggtatc 6716571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 401
Target Start/End: Complemental strand, 1321257 - 1321174
Alignment:
Q  318 tttcttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaac 401  Q
    ||||||| | ||||||||||||||||| ||| | ||  ||||| ||||||||||||  |||||| ||||| | |||||||||||    
T  1321257 tttctttctgaaacaacaaattttattaaacaaccacatctctactcaagacgaacggagatcgatgaaactgagaatacaaac 1321174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 516
Target Start/End: Original strand, 22567888 - 22567964
Alignment:
Q  438 ggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcca 516  Q
    |||||||  |||||||| |||||| ||||||||||||||||||  |||||| |||| ||||||| ||||||| ||||||    
T  22567888 ggacaacatccaccaaaatacacatcaccacctaaaacagactctttcacg-aaacaaccactg-aaaaacggtatcca 22567964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 522
Target Start/End: Complemental strand, 36674786 - 36674730
Alignment:
Q  465 ccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 522  Q
    |||||||||| ||||| ||||| |||| |||||||| |||||||||||||||| ||||    
T  36674786 ccacctaaaagagactacttca-gaaagcgaccactataaaaacgatatccaatacca 36674730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 409
Target Start/End: Original strand, 48058326 - 48058379
Alignment:
Q  356 tctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 409  Q
    |||||||||||||| |||| ||| |||||||||  ||||||||||| |||||||    
T  48058326 tctctgctcaagacaaacagagaccggtgaaatagagaatacaaacgaaaggcg 48058379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 514
Target Start/End: Complemental strand, 43235645 - 43235601
Alignment:
Q  470 taaaacagacttcttcacgaaaacgaccactgtaaaaacgatatc 514  Q
    |||||||||||  |||||||||||| |||| ||||||||||||||    
T  43235645 taaaacagactcattcacgaaaacggccaccgtaaaaacgatatc 43235601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 322 - 409
Target Start/End: Original strand, 41790 - 41876
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcg 409  Q
    ||||||||||||||||||||||||||| ||||  |||||| |||||||||| | ||  |||||||||| |||||||||| ||||||||    
T  41790 ttttttaaacaacaaattttatttaacaatcaaatctctgttcaagacgaa-agaggccggtgaaattgagaatacaaattaaaggcg 41876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 518
Target Start/End: Original strand, 41915 - 41981
Alignment:
Q  452 aaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 518  Q
    ||| |||||| |||||||||||||| | | |||| || |||||||| || |||||||||||||||||    
T  41915 aaaatacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatccaac 41981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 450 - 520
Target Start/End: Complemental strand, 58439 - 58369
Alignment:
Q  450 ccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacac 520  Q
    ||||| |||||| ||||||| |||||||||| ||||||||||||||||| |||||||  ||||||||||||    
T  58439 ccaaagtacacatcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacac 58369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 424 - 518
Target Start/End: Complemental strand, 37043 - 36950
Alignment:
Q  424 aaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 518  Q
    ||||||| || ||||||| || |||| |||| |||||  |||||||||||||||||| ||||||| |||| |||||||||||||||| |||||||    
T  37043 aaaaacacccatgaggaccacacccaacaaaatacacgtcaccacctaaaacagactccttcacg-aaaccaccactgtaaaaacgacatccaac 36950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 406
Target Start/End: Complemental strand, 37168 - 37084
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaag 406  Q
    ||||| |||||||||| |||||| ||| | | | || |||||||||||||||| ||| |||||||| | | ||||||||| ||||    
T  37168 tttttgaaacaacaaaatttattaaacaacctgatccctgctcaagacgaacagagaccggtgaaactgataatacaaacaaaag 37084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 407
Target Start/End: Original strand, 3880232 - 3880317
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaagg 407  Q
    |||||| |||||||||||||||| ||| ||||| || |||||||||||||||| ||| |||||||| | | ||||||||| |||||    
T  3880232 tttttttaacaacaaattttattaaacaatcagatccctgctcaagacgaacagagaccggtgaaactgaaaatacaaacaaaagg 3880317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 322 - 418
Target Start/End: Complemental strand, 13423823 - 13423727
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    ||||| ||||| |||||||||||||||||| ||||| || ||||||||||||| ||| |  ||||| | ||||||||| ||||||||| ||| ||||    
T  13423823 tttttgaaacagcaaattttatttaaccattaggtccctcctcaagacgaacagagacctttgaaactgagaatacaatctaaaggcgtcgtatata 13423727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 15120341 - 15120403
Alignment:
Q  418 accctgaaaaacatccttgaggacaacccccaccaaattacacaccaccacctaaaacagact 480  Q
    ||||| |||||||||| ||||||||||  |||||||| |||||| ||||||||||||||||||    
T  15120341 accctaaaaaacatccatgaggacaacatccaccaaaatacacatcaccacctaaaacagact 15120403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 418
Target Start/End: Complemental strand, 6860457 - 6860398
Alignment:
Q  359 ctgctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgccgtgtata 418  Q
    |||||||||| ||| |||||||||||||| ||||||||||||| |||| |||||| ||||    
T  6860457 ctgctcaagatgaatatagatcggtgaaactaagaatacaaacaaaagacgccgtatata 6860398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 494
Target Start/End: Original strand, 32935099 - 32935157
Alignment:
Q  436 gaggacaacccccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacg 494  Q
    ||||||||| ||||||||| || |||||||||||||||| ||||| ||| |||||||||    
T  32935099 gaggacaacacccaccaaaataaacaccaccacctaaaatagactccttaacgaaaacg 32935157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 463 - 523
Target Start/End: Original strand, 3880378 - 3880439
Alignment:
Q  463 caccacctaaaacagacttcttcacgaaaa-cgaccactgtaaaaacgatatccaacaccat 523  Q
    |||||||||||||| |||| ||  |||||| |||||||| ||||||||||||||||||||||    
T  3880378 caccacctaaaacaaacttttttccgaaaaacgaccactataaaaacgatatccaacaccat 3880439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 322 - 387
Target Start/End: Original strand, 16180477 - 16180541
Alignment:
Q  322 ttttttaaacaacaaattttatttaaccatcaggtctctgctcaagacgaacatagatcggtgaaa 387  Q
    |||||||| || ||||||||||| ||  ||||| ||||||||||||||||||| ||||||||||||    
T  16180477 ttttttaatcagcaaattttattaaaa-atcagatctctgctcaagacgaacaaagatcggtgaaa 16180541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 410
Target Start/End: Original strand, 20701457 - 20701505
Alignment:
Q  362 ctcaagacgaacatagatcggtgaaattaagaatacaaactaaaggcgc 410  Q
    ||||||||||||| |||||||||||| | ||||||||||| ||||||||    
T  20701457 ctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaggcgc 20701505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 517
Target Start/End: Original strand, 20701584 - 20701638
Alignment:
Q  463 caccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaa 517  Q
    ||||||||| |||||||   ||||||||| | |||||||||||||||||||||||    
T  20701584 caccacctataacagacccattcacgaaagcaaccactgtaaaaacgatatccaa 20701638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 446 - 522
Target Start/End: Original strand, 1422 - 1498
Alignment:
Q  446 cccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacca 522  Q
    ||||| ||| |||||  ||||||||||||| |||| || ||||| ||| ||||||||||||||||||||||||||||    
T  1422 cccacaaaaatacacgtcaccacctaaaactgactcctacacgagaacaaccactgtaaaaacgatatccaacacca 1498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 518
Target Start/End: Complemental strand, 19683 - 19621
Alignment:
Q  456 tacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatccaac 518  Q
    |||||| |||||||||||||| ||| |||| | ||||||||| || |||||||||||||||||    
T  19683 tacacatcaccacctaaaacaaactccttctcaaaaacgacctctataaaaacgatatccaac 19621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University