View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7252_low_3 (Length: 328)
Name: NF7252_low_3
Description: NF7252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7252_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 12646475 - 12646789
Alignment:
| Q |
1 |
catttgttcgttgttggtgttcagctagtgttaatggcattctttgtctctctcaaggttttcttgaccccatgaccattgtattgtggaatccagccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12646475 |
catttgttcgttgttggtgttcagctagtgttaatggcattctttgtctctctcaaggttttattgaccccatgaccattgtattgtggaatccagccaa |
12646574 |
T |
|
| Q |
101 |
tggggaatttaagattgttccttgtagccatcgaccatataagtacattgagtttaatactcaaccttattcatttggttatgatcgtgttagagatgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12646575 |
cggggaatttaagattgttccttgtagccatcgaccatataagaacattgagtttaatactcaaccttattcatttggttatgatcgtgttagagatgac |
12646674 |
T |
|
| Q |
201 |
tataagattattcgaattattagttttcacatattttttgaaggtgcttgggtaattttgccagagaagaatagccctttctgggagatggacttggatt |
300 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12646675 |
tataagattattcgaatggttaattttcacatattttttgaaggtgcttgggtttttttgccagagaagaatagccctttctgggagatggacttggatt |
12646774 |
T |
|
| Q |
301 |
ttgacgatgatgatg |
315 |
Q |
| |
|
||||||||||||||| |
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| T |
12646775 |
ttgacgatgatgatg |
12646789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 12651607 - 12651921
Alignment:
| Q |
1 |
catttgttcgttgttggtgttcagctagtgttaatggcattctttgtctctctcaaggttttcttgaccccatgaccattgtattgtggaatccagccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12651607 |
catttgttcgttgttggtgttcagctagtgttaatggcattctttgtctctctcaaggttttcttgaccccatgaccattgtattgtggaatccagccac |
12651706 |
T |
|
| Q |
101 |
tggggaatttaagattgttccttgtagcc--atcgaccatataagtacattgagtttaatactcaaccttattcatttggttatgatcgtgttagagatg |
198 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12651707 |
cggggaatttaagattgttccttgtagccatatcgaccatataaatacattgagtttaatactcaaccttattcatttggttatgatcgtgttaaggatg |
12651806 |
T |
|
| Q |
199 |
actataagattattcgaattattagttttcacatattttttgaaggtgcttgggtaattttgccagagaagaatagccctttctgggagatggacttgga |
298 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12651807 |
accataagattattcgaattattagttttcac--attttttgaaggtgcatggataattttgccagagatgaatagccctttctgggagatggacttgga |
12651904 |
T |
|
| Q |
299 |
ttttgacgatgatgatg |
315 |
Q |
| |
|
||||| ||| |||||| |
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|
| T |
12651905 |
atttgatgataatgatg |
12651921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 12724335 - 12724418
Alignment:
| Q |
75 |
accattgtattgtggaatccagccactggggaatttaagattgttccttgtagccatcgaccatataagtacattgagtttaat |
158 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| |||||||| |||||||| || ||| || |||||||||||||| |
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|
| T |
12724335 |
accattgtattgtggaatccagccaccgaggaatttaaggttgttcctcatagccatcagccgtatgagaacattgagtttaat |
12724418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 4027483 - 4027522
Alignment:
| Q |
173 |
atttggttatgatcgtgttagagatgactataagattatt |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
4027483 |
atttggttatgaccgtgttagagatgactataagattatt |
4027522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 6117394 - 6117428
Alignment:
| Q |
172 |
catttggttatgatcgtgttagagatgactataag |
206 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
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|
| T |
6117394 |
catttggttatgatcgtgttagatatgactataag |
6117428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 12712332 - 12712299
Alignment:
| Q |
172 |
catttggttatgatcgtgttagagatgactataa |
205 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
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|
| T |
12712332 |
catttggttatgatcgtgttagacatgactataa |
12712299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 14682436 - 14682403
Alignment:
| Q |
173 |
atttggttatgatcgtgttagagatgactataag |
206 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
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| T |
14682436 |
atttggttatgatcgtgttagagatgattataag |
14682403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 30651138 - 30651177
Alignment:
| Q |
173 |
atttggttatgatcgtgttagagatgactataagattatt |
212 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
30651138 |
atttggttatgaccatgttagagatgactataagattatt |
30651177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 31777484 - 31777523
Alignment:
| Q |
173 |
atttggttatgatcgtgttagagatgactataagattatt |
212 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
31777484 |
atttggttatgaccatgttagagatgactataagattatt |
31777523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 29352951 - 29352912
Alignment:
| Q |
173 |
atttggttatgatcgtgttagagatgactataagattatt |
212 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
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|
| T |
29352951 |
atttggttatgactgtgttagagatgactataagattatt |
29352912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 34324907 - 34324946
Alignment:
| Q |
173 |
atttggttatgatcgtgttagagatgactataagattatt |
212 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
34324907 |
atttggttatgaccatgttagagatgactataagattatt |
34324946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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