View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7253_high_1 (Length: 911)

Name: NF7253_high_1
Description: NF7253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7253_high_1
NF7253_high_1
[»] chr4 (1 HSPs)
chr4 (17-901)||(41630015-41630884)


Alignment Details
Target: chr4 (Bit Score: 758; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 17 - 901
Target Start/End: Complemental strand, 41630884 - 41630015
Alignment:
Q  17 aattagtaggtccacatgaaaaccaaatctcaaattcccattgcaaaagtatgcagaattctagtactattatcaagtatgaaccaagttggatagtaca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41630884 aattagtaggtccacatgaaaaccaaatctcaaattcccattgcaaaagtatgcagaattctagtactattatcaagtatgaaccaagttggatagtaca 41630785  T
Q  117 atgaaaaaacttcaactgttttaccaattcatcatgtaactgtataacacatagcagacagttggtgaaaatcataactaatactcatctaacattatag 216  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41630784 atgaagacacttcaactgttttaccaattcatcatgtaactgtataacacatagcagacagttggtgaaaatcataactaatactcatctaacattatag 41630685  T
Q  217 aatcaaaaagcatttgatctatcaattaaacataatgaaatattctccatacatnnnnnnnttaaaataaaccaatctacctaattacccaatcccaaca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  41630684 aatcaaaaagcatttgatctatcaattaaacataatgaaatattctccatacataaaaaaattaaaataaaccaatctacctaattacccaatcccaaca 41630585  T
Q  317 aattaacagctaataattaattaaccaatattaattattccat------agccacacaattaggcatcagaaacaacactaagatcatcttcttcttcaa 410  Q
    |||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41630584 aattaacagctaataattaattaaccaatattaattattccatttccatagccacacaattaggcatcagaaacaacactaagatcatcttcttcttcaa 41630485  T
Q  411 gtggagctggcatattgagatctatgaaactctctttgaatctagcagcagtaggattaacattaacattaacattaacgttaacattagcagtggaagt 510  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||                  ||||||||||||||    
T  41630484 gtggagctggcatattgagatctatgaaactgtctttgaatctagcagcagtaggattaacattaaca------------------ttagcagtggaagt 41630403  T
Q  511 tgatgaagaagggatcatgagatgagatctcttgtgaccaccaagtgcttgaccagaaccaaaaaccttaaaacaaaatggacattcaaaaatcttatca 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41630402 tgatgaagaagggatcatgagatgagatctcttgtgaccaccaagtgcttgaccagaaccaaaaaccttaaaacaaaatggacattcaaaaatcttatca 41630303  T
Q  611 tcgttaccattaccattcttcttcgcttcatcgcgacaacaaatacttctatgacttcccaatgctctagaagatcgaaatgttttcccacaattttcgc 710  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41630302 tcgttaccattaccattcttc---gcttcatcgcgacaacaaatacttctatgacttcccaatgctctagaagatcgaaatgttttcccacaattttcgc 41630206  T
Q  711 ataaatgcttcccacgaactcgtttcaataacttcaccttcgatattttctccaccgatccctcatcttcttcttgttccacattgttgtcgttgttcat 810  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41630205 ataaatgcttcccacgaactcgtttcaataacttcaccttcgatattttctccaccgatccctcatcttcttcttgttccacattgttgacgttgttcat 41630106  T
Q  811 ctttcgactccatttgtccctcgaaagcatcatgagacacatagcaacatcttcttcaggtgaagtatcagaaactgaactcacaggttct 901  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41630105 ctttcgactccatttgtccctcgaaagcatcatgagacacatagcaacatcttcttcaggtgaagtatcagaaactgaactcacaggttct 41630015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University