View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7253_high_11 (Length: 251)
Name: NF7253_high_11
Description: NF7253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7253_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 32033293 - 32033059
Alignment:
| Q |
17 |
aatacgtgcttgacaacctgtacacgtatatacataaattttgtaagatattcatcaagtcacaaaaataa-ttaatcaacaaagatttgaaggaatata |
115 |
Q |
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| T |
32033293 |
aatacgtgcttgacaacctgtacacgtatatacataaattttgtaagatattcatcaagtcacataaataaattaatcaacaaagatttgaaggaatata |
32033194 |
T |
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| Q |
116 |
agaaggggaaggggggaaaattaaatatggtgaagaaggtattaataagtgaagcacattctaagagtatcaccaacatggaaccttttagtagaagtcc |
215 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
32033193 |
agaaggggaagggggaaaaattaaatatggtgaagaaggtattaataagtgaagcacatactaagagtatcaccaacatggaaccatttagtagaagtcc |
32033094 |
T |
|
| Q |
216 |
aatttttatagtcagggtgatctatgctactccac |
250 |
Q |
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||||||| |||||||||||||||||| || ||||| |
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| T |
32033093 |
aatttttttagtcagggtgatctatgatagtccac |
32033059 |
T |
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