View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7253_high_9 (Length: 326)
Name: NF7253_high_9
Description: NF7253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7253_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 881343 - 881046
Alignment:
| Q |
20 |
aaaccgccttgccaaattctatcaagaggtaaccactcatcacataacaacttatttgtctcaattaaaattcacatgtttggaattttt-attgtatga |
118 |
Q |
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| T |
881343 |
aaaccgccttgccaaattctatcaagaggtaaccactgatcacataacaacttgtttgtctcaatcaaaattcacatatttggaattttttattgtatga |
881244 |
T |
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| Q |
119 |
ttttcagatatttggatttgaagaagtagaaagccccaagttcggagagtttaaggttgtatggctacgtgttccatcttcttccttatatcttcacctc |
218 |
Q |
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| T |
881243 |
ttttcagatatttggatttgaagaagtagaaagccccaagttcggagagtttaaggttgtatggctacgtgttccatcttcttcattatatcttcacctc |
881144 |
T |
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| Q |
219 |
atcgagcgcaacccatctaacaatctccctgaaggtccatggagtgccacctctcctgttaaagacccttcccatcttcctagaggccatcatctctg |
316 |
Q |
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| T |
881143 |
atcgagcgcaacccatctaacaatctccctgaaggtccatggagtgccacctctcctgttaaagacccttcccatcttcctagaggccatcatctctg |
881046 |
T |
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