View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7253_low_10 (Length: 289)
Name: NF7253_low_10
Description: NF7253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7253_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 46301391 - 46301247
Alignment:
| Q |
19 |
gaaccaccattttttctgcctagcatagaacaaaggcattaagccttcgtcttccattgttacaaagaaagacaaaaaccacaaagagtaagtatgagaa |
118 |
Q |
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| T |
46301391 |
gaaccaccattttttctgcctagcatagaacaaaggcattaagccttcgtcttccattgttacaaagaaagacaaaaaccacaaagagtaagtatgagaa |
46301292 |
T |
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| Q |
119 |
aacaaaaatgtagctgttgcaaaggttggtgtttgttacaatgtg |
163 |
Q |
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| T |
46301291 |
aactaaaatgtagctgttgcaaaggttggtgtttgttacaatgtg |
46301247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 166
Target Start/End: Complemental strand, 46301248 - 46301218
Alignment:
| Q |
136 |
tgcaaaggttggtgtttgttacaatgtgggg |
166 |
Q |
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| T |
46301248 |
tgcaaaggttggtgtttgttacaatgtgggg |
46301218 |
T |
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