View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7253_low_13 (Length: 212)
Name: NF7253_low_13
Description: NF7253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7253_low_13 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 33492572 - 33492742
Alignment:
| Q |
14 |
agcagagactgcatttacgtagcaacaaagactatactctaatagataaatagtgtagtagcatcgtggtttcgctttatatagtttggtgataatttaa |
113 |
Q |
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| T |
33492572 |
agcagagactgcatttacgtagcaacacagactatactt-----gataaattgtgtagtaacatcgtggtttcgctttatatagtttg-tgaaaatttaa |
33492665 |
T |
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| Q |
114 |
aattatttcacggcgcaacaacggtaattgcaaccatcataaacgcaactgcgacacccaactttataagtgaccgc |
190 |
Q |
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| T |
33492666 |
aattatttcacggcgcaacaacggtaattgcaaccatcataaacgcaactgctacacccaactttatagatgaccgc |
33492742 |
T |
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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 3975369 - 3975444
Alignment:
| Q |
58 |
gataaatagtgtagtagcatcgtggtttcgctttatatagtttggtgataatttaaaattatttcacggcgcaacaa |
134 |
Q |
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| T |
3975369 |
gataaatagtgtagtagtatggtggtgtcactttatatagttt-gtgaaaatttaaaatcatttcacgctgcaacaa |
3975444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 32520126 - 32520202
Alignment:
| Q |
58 |
gataaatagtgtagtagcatcgtggtttcgctttatatagtttggtgataatttaaaattatttcacggcgcaacaac |
135 |
Q |
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| T |
32520126 |
gataaatagtgtaatagcatggtggtgtcactttatatagttt-gtgaaaatttaaaattatttcacgccgcaacaac |
32520202 |
T |
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Target: scaffold0543 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 6283 - 6348
Alignment:
| Q |
59 |
ataaatagtgtagtagcatcgtggtttcgctttatatagtttggtgataatttaaaattatttcacg |
125 |
Q |
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| T |
6283 |
ataaattgtgtagtagcatgctggtgtcgctttatatagttt-ttgaaaatttaaaattatttcacg |
6348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 7828 - 7893
Alignment:
| Q |
59 |
ataaatagtgtagtagcatcgtggtttcgctttatatagtttggtgataatttaaaattatttcacg |
125 |
Q |
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|||||| |||||||||||| |||| |||||||||||||||| ||| ||||||||||||||||||| |
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| T |
7828 |
ataaattgtgtagtagcatgctggtgtcgctttatatagttt-ttgaaaatttaaaattatttcacg |
7893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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