View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7253_low_3 (Length: 474)
Name: NF7253_low_3
Description: NF7253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7253_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 1840946 - 1841398
Alignment:
| Q |
18 |
ggaaggatattgttcttacaatcaccatcacaacttgtttcactcgaattcgtgtcttgattgtaattattgtttccaaatgaataaggtttccggagaa |
117 |
Q |
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| T |
1840946 |
ggaaggatattgttcttacaatcaccatcacaacttgtttcactcgaattcgtgtcttcattgtaattattgtttccacatgaataaggtttccggagaa |
1841045 |
T |
|
| Q |
118 |
ccatcaccggcgtgacaccaacatttttgtcttgtttctcgagctcatcaacacgttctttaagttgtttcacataatcaattgcttctcgaagtattga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1841046 |
ccatcaccggcgtgacaccaacatttttgtcttgtttctcgagctcatcaacacgttctttaagttgtttcacataatcaattgcttctcgaagtattga |
1841145 |
T |
|
| Q |
218 |
agccttgtctgtctataaaaatggaatattaaaattttagaaaaatatgatcaaaatatgttatacgaataatggacccgatgaaactagtgacaaattt |
317 |
Q |
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| T |
1841146 |
agccttgtctgtctataaaaatggaatattaaaattttagaaaaatatgatcaaaatatattatacgaataatggatccgatgaaactagtgacaaattt |
1841245 |
T |
|
| Q |
318 |
accttgctcaagccgggaatagtggctgaaagtgcaatgaatttctcagacaactcctgtcttcgttttctctctgccattatatgatcaatacactgtg |
417 |
Q |
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| T |
1841246 |
accttgctcaagccgggaatagtggctgaaagtgcaatgaatttctcagacaactcctgtcttcgttttctctctgccattatatgatcaatacactgtg |
1841345 |
T |
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| Q |
418 |
aactgcttctacctctcttcactctattttgttgatttattttcatctcactc |
470 |
Q |
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| T |
1841346 |
aactgcttctacctctcttcactccattttgttgatttattttcatttcactc |
1841398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 86 - 256
Target Start/End: Original strand, 1820750 - 1820920
Alignment:
| Q |
86 |
attgtttccaaatgaataaggtttccggagaaccatcaccggcgtgacaccaacatttttgtcttgtttctcgagctcatcaacacgttctttaagttgt |
185 |
Q |
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|||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
1820750 |
attgattccacatgaataaggttgtcggagaaccatcaccggcgtgacaccaacatttttgtcttgtttctcgagctcttcaacatgttctttaagttgt |
1820849 |
T |
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| Q |
186 |
ttcacataatcaattgcttctcgaagtattgaagccttgtctgtctataaaaatggaatattaaaatttta |
256 |
Q |
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| T |
1820850 |
ttcacataatcaatcgcttctcgaagtaatgaagccttgtccatctataaagaaggaatcgtaaaatttta |
1820920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 305 - 441
Target Start/End: Original strand, 1823912 - 1824048
Alignment:
| Q |
305 |
tagtgacaaatttaccttgctcaagccgggaatagtggctgaaagtgcaatgaatttctcagacaactcctgtcttcgttttctctctgccattatatga |
404 |
Q |
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|||| ||||||||||||||||||| || |||||||| || ||||||||||||||||| |||||||| || ||||| | |||||||||||||||||||||| |
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| T |
1823912 |
tagttacaaatttaccttgctcaatccaggaatagtagccgaaagtgcaatgaatttttcagacaattcttgtctcctttttctctctgccattatatga |
1824011 |
T |
|
| Q |
405 |
tcaatacactgtgaactgcttctacctctcttcactc |
441 |
Q |
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| T |
1824012 |
tcaatacattgtgaactgcttctacctttcttcactc |
1824048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 4701117 - 4701153
Alignment:
| Q |
255 |
tagaaaaatatgatcaaaatatgttatacgaataatg |
291 |
Q |
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||||||||||||||||||| |||||||| |||||||| |
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| T |
4701117 |
tagaaaaatatgatcaaaacatgttatatgaataatg |
4701153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 282
Target Start/End: Complemental strand, 53801064 - 53801036
Alignment:
| Q |
254 |
ttagaaaaatatgatcaaaatatgttata |
282 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
53801064 |
ttagaaaaatatgatcaaaatatgttata |
53801036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 12514399 - 12514363
Alignment:
| Q |
255 |
tagaaaaatatgatcaaaatatgttatacgaataatg |
291 |
Q |
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|||||||||||||| ||||||||||||| |||||||| |
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| T |
12514399 |
tagaaaaatatgattaaaatatgttatatgaataatg |
12514363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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