View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7253_low_4 (Length: 451)

Name: NF7253_low_4
Description: NF7253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7253_low_4
NF7253_low_4
[»] chr5 (6 HSPs)
chr5 (90-222)||(26853897-26854029)
chr5 (217-318)||(26853759-26853859)
chr5 (90-184)||(34506371-34506465)
chr5 (35-82)||(34506270-34506317)
chr5 (385-430)||(26853709-26853754)
chr5 (20-73)||(26854354-26854407)
[»] chr8 (4 HSPs)
chr8 (91-222)||(42316898-42317029)
chr8 (161-222)||(45242735-45242796)
chr8 (19-87)||(45242625-45242693)
chr8 (37-87)||(42317097-42317147)
[»] chr6 (2 HSPs)
chr6 (91-222)||(31664020-31664151)
chr6 (37-87)||(31663902-31663952)
[»] chr2 (2 HSPs)
chr2 (91-222)||(6670312-6670443)
chr2 (16-87)||(6670506-6670577)
[»] scaffold0005 (2 HSPs)
scaffold0005 (91-218)||(231577-231706)
scaffold0005 (24-87)||(231778-231841)
[»] chr4 (2 HSPs)
chr4 (91-218)||(14585668-14585797)
chr4 (24-87)||(14585533-14585596)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 8e-62; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 90 - 222
Target Start/End: Complemental strand, 26854029 - 26853897
Alignment:
Q  90 attgaacgatatcagattgttgaaaaaactaattgattattatgtctaattgatacatgaacaacatatacctctcacagccagcaatgtttatacatga 189  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26854029 attgaacgatatcagattgttgaaaaaactaattggttattatgtctgattgatacatgaacaacatataactctcacagccagcaatgtttatacatga 26853930  T
Q  190 agcaagctattatttgtccttcgattcatattt 222  Q
    |||||||||||||||||||||||||||||||||    
T  26853929 agcaagctattatttgtccttcgattcatattt 26853897  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 26853859 - 26853759
Alignment:
Q  217 atattttcgcaatacttcatgttttatatgttattaagtatatggcggtgtcatgcgtccaaatcatacagaatgaacaactaaacatcaaaacataaat 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26853859 atattttcgcaatacttcatgttttatatgttattaagtatatggtagtgtca-gcgtccaaatcatacagaatgaacaactaaacatcaaaacataaat 26853761  T
Q  317 aa 318  Q
    ||    
T  26853760 aa 26853759  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 90 - 184
Target Start/End: Original strand, 34506371 - 34506465
Alignment:
Q  90 attgaacgatatcagattgttgaaaaaactaattgattattatgtctaattgatacatgaacaacatatacctctcacagccagcaatgtttata 184  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  34506371 attgaactatatcagattgttgaaaaaacaaattgattattatgtctgattgatacatgaacaacatataactctcacagccagcaatgtttata 34506465  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 34506270 - 34506317
Alignment:
Q  35 acagtatgattaataagaactctattcaactacattattgttatcaaa 82  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  34506270 acagtatgattaatgagaactctattcaactacattattgttatcaaa 34506317  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 430
Target Start/End: Complemental strand, 26853754 - 26853709
Alignment:
Q  385 ttttccattcaaactggttgctgacaacaaaagtgcaaatgactct 430  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  26853754 ttttccattcaaactggtttctgacaacaaaagtgcaaatgactct 26853709  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 26854407 - 26854354
Alignment:
Q  20 gtcctttattctgtgacagtatgattaataagaactctattcaactacattatt 73  Q
    |||||||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  26854407 gtcctttattctgtgagagtatgattaacgagaactctattgaactacattatt 26854354  T

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Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 42317029 - 42316898
Alignment:
Q  91 ttgaacgatatcagattgttgaaaaaactaattgattattatgtctaattgatacatgaacaacatatacctctcacagccagcaatgtttatacatgaa 190  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |||| |||||||||||||| |||||    
T  42317029 ttgaacgatatcagattgttgaaaaaacaaattgattattatgtctgattgatacatgaacaacatataactctaacaggcagcaatgtttatatatgaa 42316930  T
Q  191 gcaagctattatttgtccttcgattcatattt 222  Q
    |||| |||||||||||||||||||||| ||||    
T  42316929 gcaacctattatttgtccttcgattcagattt 42316898  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 45242735 - 45242796
Alignment:
Q  161 ctctcacagccagcaatgtttatacatgaagcaagctattatttgtccttcgattcatattt 222  Q
    ||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  45242735 ctctcacaggcagcaatgtttatatatgaagcaacctattatttgtccttcgattcagattt 45242796  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 45242625 - 45242693
Alignment:
Q  19 agtcctttattctgtgacagtatgattaataagaactctattcaactacattattgttatcaaacaaca 87  Q
    |||||||||||   | |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  45242625 agtcctttatttcataacagtatgattaatgagaactctattcaactacattattgctatcaaacaaca 45242693  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 42317147 - 42317097
Alignment:
Q  37 agtatgattaataagaactctattcaactacattattgttatcaaacaaca 87  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  42317147 agtatgattaatgagaactctattcaactacattattgctatcaaacaaca 42317097  T

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Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 31664020 - 31664151
Alignment:
Q  91 ttgaacgatatcagattgttgaaaaaactaattgattattatgtctaattgatacatgaacaacatatacctctcacagccagcaatgtttatacatgaa 190  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |||| |||||||||||||| |||||    
T  31664020 ttgaacgatatcagattgttgaaaaaacaaattgattattatgtctgattgatacatgaacaacatataactctaacaggcagcaatgtttatatatgaa 31664119  T
Q  191 gcaagctattatttgtccttcgattcatattt 222  Q
    |||| |||||||||||||||||||||| ||||    
T  31664120 gcaacctattatttgtccttcgattcagattt 31664151  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 31663902 - 31663952
Alignment:
Q  37 agtatgattaataagaactctattcaactacattattgttatcaaacaaca 87  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  31663902 agtatgattaatgagaactctattcaactacattattgctatcaaacaaca 31663952  T

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Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 6670443 - 6670312
Alignment:
Q  91 ttgaacgatatcagattgttgaaaaaactaattgattattatgtctaattgatacatgaacaacatatacctctcacagccagcaatgtttatacatgaa 190  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| ||||||||| |||||    
T  6670443 ttgaacgataatagattgttgaaaaaacaaattgattattatgtctgattgatacatgaacaacatataactctcacaggcagccatgtttatatatgaa 6670344  T
Q  191 gcaagctattatttgtccttcgattcatattt 222  Q
    |||| ||||||||| |||||||||||| ||||    
T  6670343 gcaacctattatttctccttcgattcagattt 6670312  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 6670577 - 6670506
Alignment:
Q  16 atcagtcctttattctgtgacagtatgattaataagaactctattcaactacattattgttatcaaacaaca 87  Q
    ||||||||||||||   | | |||||||||||| |||||||||||||| |||||||||| ||||||||||||    
T  6670577 atcagtcctttatttcataagagtatgattaatgagaactctattcaattacattattgctatcaaacaaca 6670506  T

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Target: scaffold0005 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 231706 - 231577
Alignment:
Q  91 ttgaacgatatcagattgttgaaaaaactaat-tgattatt-atgtctaattgatacatgaacaacatatacctctcacagccagcaatgtttatacatg 188  Q
    ||||||||||| |||||||||||||||  | | | |||||| |||||  |||||||||||||||||||||| ||||||||| || ||||||||||| | |    
T  231706 ttgaacgatattagattgttgaaaaaaacattctaattatttatgtccgattgatacatgaacaacatataactctcacagacaacaatgtttatatacg 231607  T
Q  189 aagcaagctattatttgtccttcgattcat 218  Q
    ||||||||||||||||||||||||||||||    
T  231606 aagcaagctattatttgtccttcgattcat 231577  T

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Target: scaffold0005; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 231841 - 231778
Alignment:
Q  24 tttattctgtgacagtatgattaataagaactctattcaactacattattgttatcaaacaaca 87  Q
    |||||| ||| ||| |||||||| | ||||||||| |||||||||||| || ||||||||||||    
T  231841 tttattttgtaacattatgattattgagaactctactcaactacattactgatatcaaacaaca 231778  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 14585668 - 14585797
Alignment:
Q  91 ttgaacgatatcagattgttgaaaaaactaat-tgattatt-atgtctaattgatacatgaacaacatatacctctcacagccagcaatgtttatacatg 188  Q
    ||||||||||| |||||||||||||||  | | | |||||| |||||  |||||||||||||||||||||| ||||||||| || ||||||||||| | |    
T  14585668 ttgaacgatattagattgttgaaaaaaacattctaattatttatgtccgattgatacatgaacaacatataactctcacagacaacaatgtttatatacg 14585767  T
Q  189 aagcaagctattatttgtccttcgattcat 218  Q
    ||||||||||||||||||||||||||||||    
T  14585768 aagcaagctattatttgtccttcgattcat 14585797  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 14585533 - 14585596
Alignment:
Q  24 tttattctgtgacagtatgattaataagaactctattcaactacattattgttatcaaacaaca 87  Q
    |||||| ||| ||| |||||||| | ||||||||| |||||||||||| || ||||||||||||    
T  14585533 tttattttgtaacattatgattattgagaactctactcaactacattactgatatcaaacaaca 14585596  T

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