View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7253_low_5 (Length: 414)
Name: NF7253_low_5
Description: NF7253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7253_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 1717336 - 1716947
Alignment:
| Q |
17 |
caacaaaatattgactacataagaaatgatagagcatgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaaaaccaaatccttg |
116 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1717336 |
caacaaaatattgactacataagaaatgatagagcctgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaataccaaatccttg |
1717237 |
T |
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| Q |
117 |
ccaataatagttaactttattgataattttattagagatcatgttatatattgaggatatctaaatgtttttacttttctatttgggtaggggaatggac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1717236 |
ccaataatagttaactttattgataattttattagagatcatattatatattgaggatatctaaatgtttttacttttctatttgggtaggggaatggac |
1717137 |
T |
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| Q |
217 |
agctgaatggagtatagaaggggcgcctatgcaagactaccaaagatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctat |
316 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1717136 |
agctgaatggagtatacaaggggcacctatgcaagactaccaaagatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctat |
1717037 |
T |
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| Q |
317 |
tgggcctacaaatgtcaatataaccattggagtctcaagtggttgatcgagaatggttacataaagctctagatgc-aaggggttcttct |
405 |
Q |
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| T |
1717036 |
tgggcctacaaatgtcaatataaccattggagtctcaagtggttgatcgagaatggttacataaagctctagatgcaaaggggttcttct |
1716947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 161 - 403
Target Start/End: Complemental strand, 1738598 - 1738356
Alignment:
| Q |
161 |
tatatattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaatggagtatagaaggggcgcctatgcaagactaccaaa |
260 |
Q |
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| T |
1738598 |
tatatattgaggatatctaaatgattttacttttctattttggtaggggaatggacggctgaatggagcatacaaggtgcgtctatgcaagactaccaaa |
1738499 |
T |
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| Q |
261 |
gatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggtt |
360 |
Q |
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||||||||||| ||||||||||||| ||||||| |||||||||||||||||| | |||| |||| |||||||| ||||| | ||||||||||||||||| |
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| T |
1738498 |
gatatgtccaaacacaaatggatgtatattctcgtgcaacatttggatgggctttttggtcctataaatgtcagaataacaaatggagtctcaagtggtt |
1738399 |
T |
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| Q |
361 |
gatcgagaatggttacataaagctctagatgcaaggggttctt |
403 |
Q |
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| T |
1738398 |
gatcgaaaatggttacataaagctctagatgtaaggggttctt |
1738356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 1753662 - 1753505
Alignment:
| Q |
243 |
ctatgcaagactaccaaagatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataacca |
342 |
Q |
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|||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
1753662 |
ctatgcaagactaccaaagatatggccaagcacaactagatgtgtattctcgtgcaacatttggatgggcttattgggcatacaaatgtcaatataacca |
1753563 |
T |
|
| Q |
343 |
ttggagtctcaagtggttgatcgagaatggttacataaagctctagatgcaaggggtt |
400 |
Q |
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| T |
1753562 |
ttggagtctcaagtggatgatcgagaatggttacataaagctctagatgtaaggggtt |
1753505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 1738833 - 1738727
Alignment:
| Q |
17 |
caacaaaatattgactacataagaaatgatagagcatgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaa--aaccaaatcct |
114 |
Q |
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|||||||||||||||| |||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
1738833 |
caacaaaatattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatcct |
1738734 |
T |
|
| Q |
115 |
tgccaat |
121 |
Q |
| |
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||||||| |
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| T |
1738733 |
tgccaat |
1738727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 268 - 384
Target Start/End: Complemental strand, 1748381 - 1748265
Alignment:
| Q |
268 |
ccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttgatcgag |
367 |
Q |
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|
|||||| ||| ||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| | ||| | |||||| || |||||| |||||||| |
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| T |
1748381 |
ccaagcccaattggatgtgtattctcgggcaacatttggatgggcttattggtcctacaaatgtcagtttaatcgttggagccttaagtggatgatcgag |
1748282 |
T |
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| Q |
368 |
aatggttacataaagct |
384 |
Q |
| |
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||||||||||||||||| |
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| T |
1748281 |
aatggttacataaagct |
1748265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 1748688 - 1748591
Alignment:
| Q |
17 |
caacaaaatattgactacataagaaatgatagagcatgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaaaaccaaatcct |
114 |
Q |
| |
|
||||||||||| |||| |||||||||||| ||||||| |||||| |||||| |||||| |||||||||||| |||| ||||||||||||||||||| |
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| T |
1748688 |
caacaaaatatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctcttacttttataggtaaaaaccaaatcct |
1748591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 1754004 - 1753919
Alignment:
| Q |
17 |
caacaaaatattgactacataagaaatgatagagcatgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaa |
102 |
Q |
| |
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|||||||||||||||||||||| || || ||||| | |||||||| || ||||||||| |||| |||||||||||||||||||| |
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| T |
1754004 |
caacaaaatattgactacataaacaacgaaagagcctcagatcttagcggcgtctcttcaacaaacgctcttagttttgtaggtaa |
1753919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 38087047 - 38086985
Alignment:
| Q |
299 |
acatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttg |
361 |
Q |
| |
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|||||||||||||| |||||||| ||||||||| | | |||| | |||||||| ||||||||| |
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| T |
38087047 |
acatttggatgggcatattgggcttacaaatgtgactctaacaactggagtcttaagtggttg |
38086985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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