View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7253_low_6 (Length: 412)
Name: NF7253_low_6
Description: NF7253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7253_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 6 - 412
Target Start/End: Complemental strand, 40115888 - 40115482
Alignment:
| Q |
6 |
atggacatcactcttcacccaacagatctgtttcaccaggccagtctaagaaaacgacttgtcaattctgggacaaatctggacacactgccaaaacgtg |
105 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
40115888 |
atggaaattactcttcacccaacagatctgtttcaccaggccagtctaagaaaacgacttgtcaattctgtgacaaatctggacacacttccaaaacgtg |
40115789 |
T |
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| Q |
106 |
ctacaaacttcatggttatccatccaaaaatcaaccacgtccatctgcccattctgctacacatactccttttatgggtgagccagattggatccttgat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40115788 |
ctacaaacttcatggttatccatccaaaaatcaaccacgtccatctgcccattctgctacacatactccttttatgggtgagccagattggatccttgat |
40115689 |
T |
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| Q |
206 |
tccggcgctacaaaccacatcactaatactcttgatgatcttcaccttactgctccctatcatggctcagacaaaattaccataggtgatggtactggac |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40115688 |
tccggcgctacaaaccacatcactaatactcttgatgatctgcaccttactgctccctatcatggctcagacaaaattaccataggtgatggtactggac |
40115589 |
T |
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| Q |
306 |
ttcccattactcatactggtaagataattttaccattgaaaagaagcactctccaccttcataaagttcttcatgttccgaatatcacttgcaagttatt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40115588 |
ttcccattactcatactggtaagataattttaccattgaaaagaagcactctccaccttcataaagttcttcatgttccaaatatcacttgcaagttatt |
40115489 |
T |
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| Q |
406 |
gtctgtc |
412 |
Q |
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| T |
40115488 |
gtctgtc |
40115482 |
T |
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