View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7253_low_7 (Length: 364)

Name: NF7253_low_7
Description: NF7253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7253_low_7
NF7253_low_7
[»] chr4 (25 HSPs)
chr4 (38-350)||(4892562-4892874)
chr4 (17-343)||(4872703-4873016)
chr4 (17-228)||(35251543-35251754)
chr4 (48-229)||(51103553-51103734)
chr4 (33-228)||(45302323-45302518)
chr4 (17-201)||(43049256-43049437)
chr4 (17-230)||(22886415-22886631)
chr4 (17-230)||(22938079-22938295)
chr4 (88-228)||(4892385-4892525)
chr4 (88-216)||(51103376-51103504)
chr4 (18-201)||(54511474-54511654)
chr4 (17-128)||(34932214-34932325)
chr4 (33-197)||(42077056-42077216)
chr4 (94-203)||(4872571-4872679)
chr4 (101-229)||(39864089-39864217)
chr4 (88-170)||(54511373-54511455)
chr4 (86-145)||(42077249-42077308)
chr4 (88-231)||(22886649-22886792)
chr4 (88-231)||(22938313-22938456)
chr4 (27-98)||(40681566-40681637)
chr4 (88-158)||(45302552-45302622)
chr4 (147-203)||(35004497-35004553)
chr4 (88-161)||(34932125-34932196)
chr4 (88-170)||(43049156-43049238)
chr4 (151-227)||(36825089-36825165)
[»] chr3 (25 HSPs)
chr3 (17-228)||(46163819-46164029)
chr3 (17-229)||(32808147-32808360)
chr3 (17-231)||(55213963-55214176)
chr3 (17-203)||(3157686-3157871)
chr3 (28-201)||(12089016-12089189)
chr3 (27-229)||(36012581-36012783)
chr3 (17-191)||(2051504-2051678)
chr3 (88-229)||(46164047-46164188)
chr3 (88-203)||(26121976-26122091)
chr3 (229-339)||(15672339-15672448)
chr3 (17-161)||(45708598-45708742)
chr3 (88-203)||(33140505-33140620)
chr3 (88-216)||(26244173-26244301)
chr3 (88-228)||(43804116-43804256)
chr3 (17-203)||(33140301-33140487)
chr3 (17-161)||(26245016-26245160)
chr3 (97-228)||(32808390-32808523)
chr3 (88-203)||(26244883-26244998)
chr3 (41-124)||(26122134-26122217)
chr3 (271-340)||(274817-274885)
chr3 (27-202)||(43031290-43031464)
chr3 (88-145)||(45708523-45708580)
chr3 (230-340)||(12074061-12074164)
chr3 (147-203)||(12015063-12015119)
chr3 (126-205)||(7565744-7565823)
[»] chr2 (11 HSPs)
chr2 (17-227)||(36937660-36937870)
chr2 (17-202)||(29469541-29469728)
chr2 (17-192)||(29166738-29166915)
chr2 (40-203)||(26407426-26407589)
chr2 (88-230)||(36937502-36937642)
chr2 (26-173)||(25961136-25961283)
chr2 (88-231)||(26407630-26407773)
chr2 (114-203)||(29166959-29167048)
chr2 (267-330)||(3435944-3436007)
chr2 (88-129)||(29469746-29469787)
chr2 (152-228)||(30786444-30786520)
[»] chr8 (23 HSPs)
chr8 (31-230)||(16997091-16997292)
chr8 (33-229)||(5074425-5074621)
chr8 (17-228)||(42950341-42950552)
chr8 (34-203)||(38225457-38225626)
chr8 (17-201)||(23488744-23488927)
chr8 (33-228)||(11732593-11732788)
chr8 (17-203)||(42026968-42027154)
chr8 (17-173)||(18385780-18385934)
chr8 (86-203)||(23488923-23489039)
chr8 (228-340)||(26953862-26953973)
chr8 (28-110)||(41480624-41480706)
chr8 (100-228)||(7905633-7905761)
chr8 (88-231)||(41480735-41480878)
chr8 (27-112)||(42373370-42373455)
chr8 (95-228)||(42950577-42950710)
chr8 (88-161)||(5074318-5074391)
chr8 (88-201)||(34153439-34153551)
chr8 (103-197)||(11732839-11732933)
chr8 (294-339)||(3507027-3507072)
chr8 (228-341)||(3507654-3507768)
chr8 (33-68)||(34153370-34153405)
chr8 (266-336)||(25616648-25616718)
chr8 (88-141)||(42373289-42373342)
[»] chr7 (22 HSPs)
chr7 (34-229)||(33190056-33190251)
chr7 (17-229)||(35315841-35316053)
chr7 (17-229)||(26073301-26073513)
chr7 (17-229)||(26097088-26097300)
chr7 (17-216)||(47215-47414)
chr7 (88-229)||(33189881-33190022)
chr7 (88-230)||(32047231-32047373)
chr7 (17-231)||(7511076-7511277)
chr7 (88-224)||(35316071-35316207)
chr7 (88-206)||(25658409-25658527)
chr7 (18-150)||(527496-527628)
chr7 (88-230)||(26073141-26073283)
chr7 (88-230)||(26096928-26097070)
chr7 (89-229)||(36642606-36642746)
chr7 (142-229)||(21297712-21297799)
chr7 (17-124)||(25658545-25658651)
chr7 (263-337)||(18791793-18791867)
chr7 (114-203)||(32056651-32056739)
chr7 (123-205)||(5964232-5964314)
chr7 (137-199)||(32056870-32056932)
chr7 (128-228)||(5963990-5964090)
chr7 (88-141)||(7511295-7511348)
[»] chr1 (21 HSPs)
chr1 (17-225)||(49784524-49784730)
chr1 (17-173)||(27134010-27134166)
chr1 (17-228)||(23329296-23329507)
chr1 (17-203)||(4067037-4067222)
chr1 (41-224)||(34535471-34535659)
chr1 (48-208)||(38208276-38208436)
chr1 (228-327)||(36815648-36815746)
chr1 (51-201)||(33321227-33321377)
chr1 (98-203)||(27133844-27133949)
chr1 (88-192)||(33321071-33321175)
chr1 (100-187)||(4066923-4067010)
chr1 (176-231)||(7481032-7481087)
chr1 (241-339)||(32238411-32238507)
chr1 (139-228)||(2464189-2464278)
chr1 (124-229)||(7481186-7481291)
chr1 (88-201)||(34535316-34535429)
chr1 (165-225)||(38208523-38208583)
chr1 (114-228)||(2464054-2464168)
chr1 (17-69)||(38208437-38208489)
chr1 (95-228)||(49784756-49784892)
chr1 (124-228)||(20993854-20993958)
[»] chr6 (12 HSPs)
chr6 (17-228)||(16434804-16435014)
chr6 (17-203)||(67497-67683)
chr6 (17-230)||(10388376-10388591)
chr6 (88-203)||(10388243-10388358)
chr6 (92-225)||(3687627-3687763)
chr6 (88-203)||(67364-67479)
chr6 (87-161)||(3687820-3687894)
chr6 (128-229)||(30122812-30122913)
chr6 (17-110)||(30847782-30847875)
chr6 (123-203)||(6714521-6714601)
chr6 (88-228)||(30847624-30847764)
chr6 (149-224)||(6169375-6169450)
[»] chr5 (10 HSPs)
chr5 (17-227)||(13932717-13932927)
chr5 (33-227)||(36150733-36150926)
chr5 (88-201)||(36150960-36151073)
chr5 (41-228)||(8999708-8999898)
chr5 (128-228)||(17990743-17990843)
chr5 (33-108)||(20730450-20730528)
chr5 (124-203)||(22843767-22843846)
chr5 (89-156)||(8999597-8999665)
chr5 (88-203)||(20730562-20730671)
chr5 (88-156)||(38040039-38040107)
[»] scaffold0024 (2 HSPs)
scaffold0024 (61-203)||(70764-70906)
scaffold0024 (92-202)||(70614-70724)
[»] scaffold0989 (1 HSPs)
scaffold0989 (290-337)||(1402-1449)
[»] scaffold0081 (2 HSPs)
scaffold0081 (27-70)||(8617-8660)
scaffold0081 (152-231)||(8705-8784)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 38 - 350
Target Start/End: Original strand, 4892562 - 4892874
Alignment:
Q  38 tgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttca 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4892562 tgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgtggaccaatctgagaaacatttca 4892661  T
Q  138 caaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttactcaatctagtt 237  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4892662 caaagacaaagaccattttgaattgtaaatagagtctgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttactcaatctagtt 4892761  T
Q  238 caacatgactctagaacctttctgcgggctacaccacttattagataattgagcctaacacttgattagtccagtcgaccaaatcaagtttattatccaa 337  Q
    | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4892762 ctaaatgactctagaacctttctgcgggctacaccacttattagataattgagcctaacacttgattagtccagtcgaccaaatcaagtttattatccaa 4892861  T
Q  338 caacaatatggtt 350  Q
    |||||||||||||    
T  4892862 caacaatatggtt 4892874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 4872703 - 4873016
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  |||||||||| ||||||||  ||||||||||||| ||||||||| ||| |||||||||| |||||||||||||||||||||||||| | |    
T  4872703 aataagattcaaaagacatt-tgccattagccactaaataatatacaaaagacattgagccattaacacccaaaatacaaaacaactaatagagtcagag 4872801  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaattt 216  Q
    |||||| ||||||||| |||| ||||||| ||| |||||| |||| | ||||||| |    | |||||| ||||||||||||||||| ||  ||||||||    
T  4872802 accaatatgagaaacacttcataaagacagagatcattttaagttattaatagaggcaaaaatcaaatttagaatttggtacaaagacaggtacaaattt 4872901  T
Q  217 gatggtttactcaatctagttcaacatgactctagaacctttctgcgggctacaccacttattagataattgagcctaacacttgattagtccagtcgac 316  Q
    ||||||||| |||||||||||  |||||| |||              ||||||||||||||||||| ||||| ||||||||||| ||||||||| | |||    
T  4872902 gatggtttattcaatctagttttacatgattct------------taggctacaccacttattagagaattgggcctaacactttattagtccaatggac 4872989  T
Q  317 caaatcaagtttattatccaacaacaa 343  Q
    ||||||| ||||| |||||||||||||    
T  4872990 caaatcatgtttaatatccaacaacaa 4873016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 35251543 - 35251754
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  ||||||||||| | |||||| ||||||||||||||||||||||| |||   |||||||||||||||| |||||||||||||||||| | |    
T  35251543 aataagatccaaaagacattacgtcattaaccactaaataatatccaaaagacattgagttattaacactcaaaataaaaaacaactaatagagtcagag 35251642  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaattt 216  Q
    ||||||||||||||||||| | |||||||||||||||| | |||| | ||||||||  ||||||||||||||||||||||||||||| ||  || |||||    
T  35251643 accaatctgagaaacatttgagaaagacaaagaccattataagttattaatagagttagggaccaaattgagaatttggtacaaagacagggaccaattt 35251742  T
Q  217 gatggtttactc 228  Q
    | ||||||||||    
T  35251743 ggtggtttactc 35251754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 48 - 229
Target Start/End: Original strand, 51103553 - 51103734
Alignment:
Q  48 cactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaa 147  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||  | |||||| |||||||  ||| | ||||||| |    
T  51103553 cactaaataatatccaaaagacattgaaccattaacactcaaaatacaaaacaactaatagaatcatgaaccaatttgagaaatgtttgataaagacaga 51103652  T
Q  148 gaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttactca 229  Q
    ||| |||||||||| | ||||||||| | |||||| |||| ||||||||||||||||||  || ||||||||||||||||||    
T  51103653 gactattttgagttattaatagagtcagtgaccaatttgaaaatttggtacaaagatagggaccaatttgatggtttactca 51103734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 228
Target Start/End: Complemental strand, 45302518 - 45302323
Alignment:
Q  33 cattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatctgagaaaca 132  Q
    ||||||| |||||| |||| |||||||||||||||||| || || |||||| |||||||||||||||||||||||||||  | ||||||| |||||||||    
T  45302518 cattatgacattaaccactgaataatatccaaaagacactggactattaacgctcaaaatacaaaacaactaatagagttagagaccaatttgagaaaca 45302419  T
Q  133 tttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttactc 228  Q
    |||||||||||||  ||  ||||||| || | | ||||||| |||| |||||| |||||||| || ||||| ||  |  |||||||||||||||||    
T  45302418 tttcacaaagacagtgaatattttgaattattagtagagtcagggatcaaattaagaatttgatataaagagagggatcaatttgatggtttactc 45302323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 43049256 - 43049437
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    |||||||| |||||| ||||||| |||||| ||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||||||||||||| | |    
T  43049256 aataagatctaaaaggcattatgtcattaaccactaaataatatccaaaagacattgaactattaacattaaaaatacaaaacaactaatagagtcagag 43049355  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaa 201  Q
    | ||||||||||||| ||| ||||| |||   |||||||||| || | |||||| || | || ||| || |||||||||||||||    
T  43049356 atcaatctgagaaacgtttgacaaaaaca---accattttgaattattaatagactcagagatcaatttaagaatttggtacaaa 43049437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 22886631 - 22886415
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  |||| |||||||  |||||| ||||||||||||| ||||||||| ||| |||| |||||| |||||||||||||||||||||| |  | |    
T  22886631 aataagatccaaaacacattatatcattaaccactaaataatattcaaaagacattgagccatgaacactaaaaatacaaaacaactaatagaattagag 22886532  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgag---ttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaa 213  Q
    || |||||||||||||||| ||||||||||  || ||||||||   || | |||| |||| || ||||| || ||||||||||||||| | |  ||| ||    
T  22886531 actaatctgagaaacatttgacaaagacaagtactattttgagttattattaataaagtcaggaaccaatttaagaatttggtacaaatacatgaaccaa 22886432  T
Q  214 tttgatggtttactcaa 230  Q
    ||||||| |||||||||    
T  22886431 tttgatgatttactcaa 22886415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 22938295 - 22938079
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  |||| |||||||  |||||| ||||||||||||| ||||||||| ||| |||| |||||| |||||||||||||||||||||| |  | |    
T  22938295 aataagatccaaaacacattatatcattaaccactaaataatattcaaaagacattgagccatgaacactaaaaatacaaaacaactaatagaattagag 22938196  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgag---ttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaa 213  Q
    || |||||||||||||||| ||||||||||  || ||||||||   || | |||| |||| || ||||| || ||||||||||||||| | |  ||| ||    
T  22938195 actaatctgagaaacatttgacaaagacaagtactattttgagttattattaataaagtcaggaaccaatttaagaatttggtacaaatacatgaaccaa 22938096  T
Q  214 tttgatggtttactcaa 230  Q
    ||||||| |||||||||    
T  22938095 tttgatgatttactcaa 22938079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 4892525 - 4892385
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||  ||| |||||||||   ||||||||||||| | ||||||||| | ||| || || |    
T  4892525 aaaatgcaaaacaactaatagagtcagggaccaatctaagaaatgtttgacaaagacagtaaccattttgagttattaatagagtcggagactaatttaa 4892426  T
Q  188 gaatttggtacaaagatagaaacaaatttgatggtttactc 228  Q
    |||||||||||||||| ||| || |||||| ||||||||||    
T  4892425 gaatttggtacaaagacagagaccaatttggtggtttactc 4892385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 51103504 - 51103376
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    ||||||||||| |||||||||||| |  |||||||| ||||||| ||| |||||| ||| ||||||||||| || | ||||||||| |||||||| ||||    
T  51103504 aaaatacaaaagaactaatagagttgaagaccaatccgagaaacttttgacaaaggcaatgaccattttgaattattaatagagtcagggaccaatttga 51103405  T
Q  188 gaatttggtacaaagatagaaacaaattt 216  Q
    |||||||||||||||| ||| || |||||    
T  51103404 gaatttggtacaaagacagagaccaattt 51103376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 54511474 - 54511654
Alignment:
Q  18 ataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggga 117  Q
    |||||||  |||||| |||||  ||||||  |||||||||||||||||||||  |||||   ||| ||||||||||||||||| ||||||||||| ||||    
T  54511474 ataagatccaaaagatattatatcattaacgactaaataatatccaaaagacgttgaac---taatactcaaaatacaaaacagctaatagagtcaggga 54511570  T
Q  118 ccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaa 201  Q
    ||||| | | |||| ||| || |||| | |||||||||||| || | |||||| ||  ||||||| || |||||||||||||||    
T  54511571 ccaatttaaaaaacgtttgactaagatatagaccattttgaattattaatagattcgtggaccaatttaagaatttggtacaaa 54511654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 34932214 - 34932325
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  ||||| ||||||  |||||| ||||||||||||| ||||||||| ||| |||||||||||||||||| |||  |||||||||||||  ||    
T  34932214 aataagatccaaaaggcattatatcattaaccactaaataatattcaaaagacattgagccattaacactcaaaatataaagtaactaatagagtcatgg 34932313  T
Q  117 accaatctgaga 128  Q
    |||||| |||||    
T  34932314 accaatttgaga 34932325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 33 - 197
Target Start/End: Complemental strand, 42077216 - 42077056
Alignment:
Q  33 cattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatctgagaaaca 132  Q
    |||||||| ||||| ||||||||||||| ||||| ||| ||| |||||| ||||||||||||||||||||||||||| |||||    ||||| | ||||     
T  42077216 cattatgctattaatcactaaataatattcaaaaaacattgagccattatcactcaaaatacaaaacaactaatagaatcggg----aatctaaaaaact 42077121  T
Q  133 tttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggta 197  Q
    | | ||||||| | | | || |||||||| | |||| ||||  ||||||| ||||||||||||||    
T  42077120 tctgacaaagatatacatcaatttgagttattaataaagtcaaggaccaatttgagaatttggta 42077056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 4872679 - 4872571
Alignment:
Q  94 caaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaattt 193  Q
    ||||||||||||||||||| |||| |||||| |||||| ||| ||||||||| ||| ||||||||||| | ||||||||  | || ||| || |||||||    
T  4872679 caaaacaactaatagagtcagggatcaatct-agaaacgtttgacaaagacagagatcattttgagttattaatagagttagagatcaatttaagaattt 4872581  T
Q  194 ggtacaaaga 203  Q
    ||||||||||    
T  4872580 ggtacaaaga 4872571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 39864217 - 39864089
Alignment:
Q  101 actaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaa 200  Q
    |||||||||| | | ||||||| |||||||  ||| |||||||||  || ||||||||||| | ||||||||| |||||||| || | ||||||||||||    
T  39864217 actaatagagacagagaccaatatgagaaaagtttgacaaagacagggatcattttgagttattaatagagtcggggaccaatttaaaaatttggtacaa 39864118  T
Q  201 agatagaaacaaatttgatggtttactca 229  Q
    ||| ||| || ||||| ||| ||||||||    
T  39864117 agacagagaccaatttaatgatttactca 39864089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 54511455 - 54511373
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaataga 170  Q
    ||||||||||| ||||||||||||||| ||||||||| | ||||| || ||||||| |||||| |||||||||| | ||||||    
T  54511455 aaaatacaaaagaactaatagagtcggagaccaatctaaaaaacaattgacaaagataaagactattttgagttattaataga 54511373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 42077249 - 42077308
Alignment:
Q  86 tcaaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagaca 145  Q
    ||||||||||||||||||||||||||||  ||||||||||| |||| ||| |||||||||    
T  42077249 tcaaaatacaaaacaactaatagagtcgatgaccaatctgaaaaacgtttgacaaagaca 42077308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 231
Target Start/End: Original strand, 22886649 - 22886792
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    |||||||||||||| |||||||||||  ||||||||| | |||| ||| ||||||| | | || ||||||| || | |||||||||   |||||| || |    
T  22886649 aaaatacaaaacaagtaatagagtcgaagaccaatctaaaaaacgtttgacaaagatagaaactattttgaattattaatagagtcaaagaccaatttaa 22886748  T
Q  188 gaatttggtacaaagatagaaacaaatttgatggtttactcaat 231  Q
     |||||| |||||||||| | || |||| | || ||||||||||    
T  22886749 aaatttgatacaaagataaataccaattcggtgatttactcaat 22886792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 231
Target Start/End: Original strand, 22938313 - 22938456
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    |||||||||||||| |||||||||||  ||||||||| | |||| ||| ||||||| | | || ||||||| || | |||||||||   |||||| || |    
T  22938313 aaaatacaaaacaagtaatagagtcgaagaccaatctaaaaaacgtttgacaaagatagaaactattttgaattattaatagagtcaaagaccaatttaa 22938412  T
Q  188 gaatttggtacaaagatagaaacaaatttgatggtttactcaat 231  Q
     |||||| |||||||||| | || |||| | || ||||||||||    
T  22938413 aaatttgatacaaagataaataccaattcggtgatttactcaat 22938456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 40681637 - 40681566
Alignment:
Q  27 aaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaa 98  Q
    ||||||||||||| || | | || ||||||||||||| |||||| ||| | |||||||||||||||||||||    
T  40681637 aaaagacattatgtcactgaccattaaataatatccataagacattgagctattaacactcaaaatacaaaa 40681566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 45302552 - 45302622
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttga 158  Q
    ||||| ||||||||||||||||||| ||||||||| ||| |||  ||| ||||||||| | ||||||||||    
T  45302552 aaaatgcaaaacaactaatagagtcagggaccaatatgaaaaatgtttgacaaagacagaaaccattttga 45302622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 35004553 - 35004497
Alignment:
Q  147 agaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaaga 203  Q
    |||| |||||||||| | ||||||||| ||||||||  |||||||||||||||||||    
T  35004553 agactattttgagttattaatagagtcagggaccaatatgagaatttggtacaaaga 35004497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 34932196 - 34932125
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagtt 161  Q
    ||||||||||| ||||||||||||  | ||||||| ||| |||||||| ||||||||  | |||||||||||||    
T  34932196 aaaatacaaaagaactaatagagtttgagaccaatatgataaacatttgacaaagac--acaccattttgagtt 34932125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 43049238 - 43049156
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaataga 170  Q
    |||||||||||||| ||||||||||||| |||||| ||| |||   || ||||||| |  |||||||||||||| | ||||||    
T  43049238 aaaatacaaaacaattaatagagtcgggcaccaatttgaaaaaagcttgacaaagatagggaccattttgagttattaataga 43049156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 36825089 - 36825165
Alignment:
Q  151 cattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttact 227  Q
    ||||||||||| | |||||||||   |||||||| || ||||||||||||| | | | || ||||||||||||||||    
T  36825089 cattttgagttattaatagagtcaatgaccaaatagaaaatttggtacaaatacaaataccaatttgatggtttact 36825165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 46164029 - 46163819
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  ||||||||||||||||||||  |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||  ||    
T  46164029 aataagatccaaaagacattatgccattaactactaaataatatccaaaagacattgagccattaacactcaaaatacaaaacaattaatagagtc-agg 46163931  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaattt 216  Q
    | ||||||||||||||||| |||||||||  |||||||||||||| | |||||||||  |||||||||||||||||||||||||||| ||  || || ||    
T  46163930 atcaatctgagaaacatttgacaaagacagggaccattttgagttattaatagagtcgcggaccaaattgagaatttggtacaaagacagggaccaactt 46163831  T
Q  217 gatggtttactc 228  Q
    ||||||||||||    
T  46163830 gatggtttactc 46163819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 32808360 - 32808147
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaataga-gtcggg 115  Q
    ||||||||  |||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |     
T  32808360 aataagatccaaaagacattatgctattaaccactaaataatatccaaaagacattgaactattaacactcaaaatacaaaacaactaatagaggtcaga 32808261  T
Q  116 gaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaa-acaaat 214  Q
    ||||||| |||||||||||| ||||||||| ||| ||||||||||| | ||||||||| |||||||| |||| ||||||  ||||| | |||| || |||    
T  32808260 gaccaatttgagaaacatttgacaaagacagagatcattttgagttattaatagagtcagggaccaatttgaaaatttgacacaaa-agagaagaccaat 32808162  T
Q  215 ttgatggtttactca 229  Q
    |||||||||||||||    
T  32808161 ttgatggtttactca 32808147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 55214176 - 55213963
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  |||||||||||||  ||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||| |    
T  55214176 aataagattcaaaagacattatgttattaaccactaaataatatccaaaagacattgaatcattaacactcaaaatgcaaaaccactaatagagtcggag 55214077  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaattt 216  Q
    |||||| |||||||| ||| ||||||||   |||||||||||||| | |||||| || |  ||||| |||| ||||||||||||||| ||| || |||||    
T  55214076 accaatttgagaaacgtttgacaaagaccttgaccattttgagttattaatagattcagataccaatttgaaaatttggtacaaagacagagactaattt 55213977  T
Q  217 gatggtttactcaat 231  Q
    ||| |||||||||||    
T  55213976 gat-gtttactcaat 55213963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 3157871 - 3157686
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  ||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||| ||||||||||  ||    
T  3157871 aataagatccaaaagacattatgtcattaatcactaaataatatccaaaaaacattgaaccattaacactcaaaataaaaaacaattaatagagtc-agg 3157773  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaaga 203  Q
    ||| ||||||||||||||| ||||||| ||  |||||||| | || | ||||||||   |||| ||| |||||||||||||||||||    
T  3157772 accgatctgagaaacatttgacaaagaaaagaaccattttaaattattaatagagttatggacgaaactgagaatttggtacaaaga 3157686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 12089189 - 12089016
Alignment:
Q  28 aaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatctgag 127  Q
    |||| ||||||| |||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |     
T  12089189 aaaggcattatgacattaaccactaaataatatccaaaagacatttaaccattaacactcaaaatacaaaacaactaatagagtcggggactaatctaaa 12089090  T
Q  128 aaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaa 201  Q
    |||  ||| | ||| |||   |||||||||| || | |||| |||| |||||||| || | |||||||||||||    
T  12089089 aaaattttgataaatacatgaaccattttgaattattaataaagtcagggaccaatttaaaaatttggtacaaa 12089016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 36012581 - 36012783
Alignment:
Q  27 aaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatctga 126  Q
    |||||||||||||| |||||  |||||||||||| ||||||||| |||  |||||| ||||||||||||||||||||||||   || || |||||| |||    
T  36012581 aaaagacattatgctattaatgactaaataatattcaaaagacattgagtcattaatactcaaaatacaaaacaactaataagatcaggaaccaatttga 36012680  T
Q  127 gaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttac 226  Q
    ||||| ||| | |||||||  |||||||||||||| | ||||||||| | || ||| |||| ||||||||||||||| ||| || |||||  || |||||    
T  36012681 gaaacgtttgaaaaagacagggaccattttgagttattaatagagtcagagatcaatttgataatttggtacaaagacagagaccaatttagtgatttac 36012780  T
Q  227 tca 229  Q
    |||    
T  36012781 tca 36012783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 2051678 - 2051504
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  |||||||||||||  || || ||||||||| |||| ||||| || |||||||||||| |||||||||||||||||||||||||  |   |    
T  2051678 aataagatccaaaagacattatgttatcaaccactaaatattatctaaaaggcattgaaccattaaccctcaaaatacaaaacaactaatagaaacaatg 2051579  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaat 191  Q
    |||||| |||||||| ||| ||||||| || |||||||||||||| | || |||||| | |||||| ||||||||    
T  2051578 accaatatgagaaacgtttgacaaagataaggaccattttgagttattaacagagtcagagaccaatttgagaat 2051504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 46164047 - 46164188
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    ||||| ||| ||||||||||||||| ||||||||| |||||||| ||| ||||||||| ||||||||||||||| | ||||||||| ||||| || ||||    
T  46164047 aaaatgcaatacaactaatagagtcagggaccaatatgagaaacgtttgacaaagacagagaccattttgagttattaatagagtcagggactaatttga 46164146  T
Q  188 gaatttggtacaaagatagaaacaaatttgatggtttactca 229  Q
    ||||||| |||||||| ||   | |||||| |||||||||||    
T  46164147 gaatttgatacaaagacagggtccaatttggtggtttactca 46164188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 26122091 - 26121976
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    |||||||||||||||||||||||||  |||||||||| |||||||||| ||||||||| | ||||||||| ||| | |||||||||  ||||||| ||||    
T  26122091 aaaatacaaaacaactaatagagtcatggaccaatctaagaaacatttgacaaagacagataccattttgtgttattaatagagtcatggaccaatttga 26121992  T
Q  188 gaatttggtacaaaga 203  Q
    |||||||||| |||||    
T  26121991 gaatttggtataaaga 26121976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 229 - 339
Target Start/End: Original strand, 15672339 - 15672448
Alignment:
Q  229 aatctagttcaacatgactctagaacctttctgcgggctacaccacttattagataattgagcctaacacttgattagtccagtcgaccaaatcaagttt 328  Q
    |||||||||| ||||||||||||||  |||||  ||||||||||| ||||||  |||||||||||||||||||||||||||| | | |||||||||||||    
T  15672339 aatctagttctacatgactctagaat-tttctatgggctacaccatttattatctaattgagcctaacacttgattagtccaatgggccaaatcaagttt 15672437  T
Q  329 attatccaaca 339  Q
    |||||||||||    
T  15672438 attatccaaca 15672448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 45708598 - 45708742
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  |||| | |||||| ||||||  ||||||||||||| |||||||| |||  |||||||| ||||||||||||||||||||| ||||| | |    
T  45708598 aataagatccaaaaaaaattatgtcattaacgactaaataatatctaaaagacattgagtcattaacagtcaaaatacaaaacaactaatcgagtcagag 45708697  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagtt 161  Q
    |||||| |||| ||| ||| ||||||||| || ||||||||||||    
T  45708698 accaatttgaggaacgtttgacaaagacagaggccattttgagtt 45708742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 33140505 - 33140620
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    ||||||||||| |||||| ||||||||||||||||||||||||  ||| |||||||||  |||||||||||||| | ||||||||| | || ||| ||||    
T  33140505 aaaatacaaaataactaaaagagtcggggaccaatctgagaaatgtttgacaaagacagtgaccattttgagttattaatagagtcagagatcaatttga 33140604  T
Q  188 gaatttggtacaaaga 203  Q
    | ||||||||||||||    
T  33140605 gcatttggtacaaaga 33140620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 26244301 - 26244173
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||  ||||||||| ||||||||||| ||| | |||||||||  ||| ||| || |    
T  26244301 aaaatacaaaacaactaatagagtcaaggaccaatctgagaaacattggacaaagacagagaccattttgtgttattaatagagtcatggatcaatttaa 26244202  T
Q  188 gaatttggtacaaagatagaaacaaattt 216  Q
     |||||| |||||||| || ||| |||||    
T  26244201 aaatttgttacaaagacagtaaccaattt 26244173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 43804116 - 43804256
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    |||||||||||||||||||||| || | |||||||||||||||||||| |||||||||| ||||||||||| || | |||| |||   ||||||| || |    
T  43804116 aaaatacaaaacaactaatagattcagagaccaatctgagaaacatttgacaaagacaatgaccattttgaattattaataaagttaaggaccaatttaa 43804215  T
Q  188 gaatttggtacaaagatagaaacaaatttgatggtttactc 228  Q
     |||||||| |||||| | | || ||||||||| |||||||    
T  43804216 aaatttggtgcaaagacaaagaccaatttgatgatttactc 43804256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 33140487 - 33140301
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  ||||| ||||||| ||||||    |||||||||||||||||||| | |  |||||||||||||||||||||| |||||||| ||| |  |    
T  33140487 aataagatcaaaaaggcattatgtcattaacggttaaataatatccaaaagacattaagacattaacactcaaaatacaaaataactaataaagttgatg 33140388  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaaga 203  Q
    |||||| ||| |||  ||| ||||||||||| | ||||||||||| | ||||||||| |  || || || |||||||| ||||||||    
T  33140387 accaatttgaaaaatgtttgacaaagacaaaaatcattttgagttattaatagagtcagaaactaatttaagaatttgatacaaaga 33140301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 26245016 - 26245160
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  |||| |||||||| |||||| ||||||||||||| ||||||||| |||  ||||| || ||||||||| |||||| || ||||||  |||    
T  26245016 aataagatccaaaaaacattatgtcattaaccactaaataatattcaaaagacattgagtcattaccattcaaaatacgaaacaattattagagttaggg 26245115  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagtt 161  Q
    |||||||| | |||| ||| ||||||||| | | |||||||||||    
T  26245116 accaatctaaaaaacctttaacaaagacataaatcattttgagtt 26245160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 32808390 - 32808523
Alignment:
Q  97 aacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgt--aaatagagtccgggaccaaattgagaatttg 194  Q
    |||||||||||||||| |||||||||||||||||| ||| ||||||| | ||||||||||||||| |   ||||||| |  ||||||| |||| | ||||    
T  32808390 aacaactaatagagtcagggaccaatctgagaaacgtttgacaaagatagagaccattttgagttatcataatagagccaaggaccaatttgaaattttg 32808489  T
Q  195 gtacaaagatagaaacaaatttgatggtttactc 228  Q
    ||||||||| ||| || |||||| || |||||||    
T  32808490 gtacaaagacagagaccaatttggtgatttactc 32808523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 26244998 - 26244883
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    |||||||||||||| ||||||||||   ||||||||||| ||| |||| ||||||||| |||||||||||  || | |||||||||  ||||||| || |    
T  26244998 aaaatacaaaacaattaatagagtcactgaccaatctgataaatatttgacaaagacagagaccattttgttttattaatagagtcatggaccaatttaa 26244899  T
Q  188 gaatttggtacaaaga 203  Q
     |||||||||||||||    
T  26244898 aaatttggtacaaaga 26244883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 26122134 - 26122217
Alignment:
Q  41 cattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatct 124  Q
    |||||| ||||||||||||||||||||||| |||  ||||| |||||||||||| |||||| || ||||||  |||||||||||    
T  26122134 cattaaccactaaataatatccaaaagacattgagtcattaccactcaaaataccaaacaattattagagttagggaccaatct 26122217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 274885 - 274817
Alignment:
Q  271 ccacttattagataattgagcctaacacttgattagtccagtcgaccaaatcaagtttattatccaacaa 340  Q
    ||||||||||| |||||||| ||||||||||||||||||| | ||||||||||||||||| ||| |||||    
T  274885 ccacttattagctaattgagtctaacacttgattagtccaat-gaccaaatcaagtttataatctaacaa 274817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 43031290 - 43031464
Alignment:
Q  27 aaaagacattatgccattaaacactaaataatatccaaaagacagtgaacc----attaacactcaaaatacaaaacaactaatagagtcggggaccaat 122  Q
    |||||||||||||| ||||| ||||||||||||||  ||||| | ||| ||    ||||||| |||||||||||||||| |||||      |||| ||||    
T  43031290 aaaagacattatgctattaaccactaaataatatcgcaaagatactgatccattaattaacattcaaaatacaaaacaattaata-----cgggatcaat 43031384  T
Q  123 ctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaag 202  Q
    || | |||||||| |||||||||| || |||||| |||| | |||||| || |  ||||| || |||||||| |||||||    
T  43031385 ctaaaaaacatttgacaaagacaatgatcattttaagttattaatagaatcagaaaccaatttaagaatttgatacaaag 43031464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 45708580 - 45708523
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagaca 145  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||| ||| |||||||||    
T  45708580 aaaatacaaaagaactaatagagacggagaccaatctgagaaacgtttgacaaagaca 45708523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 340
Target Start/End: Complemental strand, 12074164 - 12074061
Alignment:
Q  230 atctagttcaacatgactctagaacctttctgcgggctacaccacttattagataattgagcctaacacttgattagtccagtcgaccaaatcaagttta 329  Q
    ||||||||  ||||||||||||||| |||||  |||||| |||||||||||| ||||||  |||      ||||||||||| | |||||||||| |||||    
T  12074164 atctagttttacatgactctagaac-tttctatgggctataccacttattagctaattggacct------tgattagtccaatggaccaaatcaggttta 12074072  T
Q  330 ttatccaacaa 340  Q
    |||||||||||    
T  12074071 ttatccaacaa 12074061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 12015063 - 12015119
Alignment:
Q  147 agaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaaga 203  Q
    |||| |||||||||| | ||||||||  |||| ||||||||||||||||||||||||    
T  12015063 agactattttgagttattaatagagttggggatcaaattgagaatttggtacaaaga 12015119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 7565744 - 7565823
Alignment:
Q  126 agaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagata 205  Q
    |||||| ||| ||||||| |  |||||||||||||| | |||| ||||   ||||||||||||||||||||||| |||||    
T  7565744 agaaacgtttgacaaagagatggaccattttgagttattaataaagtcgtagaccaaattgagaatttggtacagagata 7565823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 36937660 - 36937870
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  ||||| ||||||| |||||| |||||||||||||| |||||| | |||  |||||||||||||||||||||||||||||||||||| |||    
T  36937660 aataagatccaaaaggcattatgtcattaaccactaaataatatctaaaagatactgagtcattaacactcaaaatacaaaacaactaatagagtcaggg 36937759  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaattt 216  Q
    | |||| |||||||||||||||||||||| |||||||||| |||| | |||||||||  |||||||||||||||||||||||||||| |  ||| |||||    
T  36937760 atcaatttgagaaacatttcacaaagacagagaccattttcagttattaatagagtcaaggaccaaattgagaatttggtacaaagacaagaaccaattt 36937859  T
Q  217 gatggtttact 227  Q
    |||||||||||    
T  36937860 gatggtttact 36937870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 29469728 - 29469541
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtc--gg 114  Q
    ||||||||  ||||||||||||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||||||||||| ||||||||||  ||    
T  29469728 aataagatcgaaaagacattatgtcattaaccactaaataatatccaaaagacattgagtcattaacactcaaaatacaaaacaattaatagagtcaggg 29469629  T
Q  115 ggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaag 202  Q
    |||| |||||||||||||||| |||||||||  |||||||||||||| | |||||||||   |||||| |||||||||||||||||||    
T  29469628 ggactaatctgagaaacatttgacaaagacagcgaccattttgagttattaatagagtcaatgaccaatttgagaatttggtacaaag 29469541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 29166915 - 29166738
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  ||||| |||||| ||||||| ||||||||||||| ||||||||| | |  ||||||||||| ||||||||||||||||||||| || |||    
T  29166915 aataagatccaaaaggcattataccattaaccactaaataatattcaaaagacattaagtcattaacactcgaaatacaaaacaactaatagactcaggg 29166816  T
Q  117 accaatct--gagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatt 192  Q
     |||||||  |||||||||||||||||||||| |||| ||||||||| | ||||||||| ||||||||||| ||||||    
T  29166815 cccaatctgagagaaacatttcacaaagacaaggaccgttttgagttattaatagagtcggggaccaaattaagaatt 29166738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 40 - 203
Target Start/End: Complemental strand, 26407589 - 26407426
Alignment:
Q  40 ccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcaca 139  Q
    ||||||| ||||||||||||| ||||||| | |||||||||||||||||||||||||| |||||||||||| |  ||||||||||||||||  ||| |||    
T  26407589 ccattaaccactaaataatattcaaaagatattgaaccattaacactcaaaatacaaatcaactaatagagacatggaccaatctgagaaaagtttgaca 26407490  T
Q  140 aagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaaga 203  Q
    ||||||  |||||||||||||| | ||||||||| |  ||||| |||| |||||||||||||||    
T  26407489 aagacagggaccattttgagttattaatagagtctgaaaccaatttgaaaatttggtacaaaga 26407426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 36937642 - 36937502
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    ||||| |||||||||||||||||||  | |||||||| |||||  ||| ||||||||||||||||||  ||||| | ||||||||| | |||||| ||||    
T  36937642 aaaatgcaaaacaactaatagagtcaagtaccaatctaagaaatgtttgacaaagacaaagaccatt--gagttattaatagagtcagagaccaatttga 36937545  T
Q  188 gaatttggtacaaagatagaaacaaatttgatggtttactcaa 230  Q
    |||||||||||||||||||  || |||||| ||||||||||||    
T  36937544 gaatttggtacaaagatagggactaatttggtggtttactcaa 36937502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 173
Target Start/End: Complemental strand, 25961283 - 25961136
Alignment:
Q  26 taaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatctg 125  Q
    ||||| |||||||| |||||| |||||||||||||| |||| ||| ||| ||||||||||| | | |||||||||| ||||||||||   ||| ||| ||    
T  25961283 taaaaaacattatgtcattaaccactaaataatatctaaaaaacattgagccattaacacttacagtacaaaacaattaatagagtcaaagactaatatg 25961184  T
Q  126 agaaacatttcacaaagacaaagaccattttgagttgtaaatagagtc 173  Q
    |||||| ||| | ||| |||  ||||||||| |||| | |||||||||    
T  25961183 agaaacgtttgataaaaacagggaccattttaagttattaatagagtc 25961136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 231
Target Start/End: Original strand, 26407630 - 26407773
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    |||||||||||||||||||||||||  ||| |||  ||| |||   || |||||||||  ||||||||||| || | ||||||||| ||||||||  |||    
T  26407630 aaaatacaaaacaactaatagagtcaaggatcaacatgaaaaatgattgacaaagacagggaccattttgaattattaatagagtcagggaccaatatga 26407729  T
Q  188 gaatttggtacaaagatagaaacaaatttgatggtttactcaat 231  Q
     ||||||||||||||| ||  || || |||||| ||||||||||    
T  26407730 aaatttggtacaaagacagggactaaattgatgatttactcaat 26407773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 29166959 - 29167048
Alignment:
Q  114 gggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaaga 203  Q
    |||| ||||||||||||| ||| ||||| ||| ||||||||||||||| | |||||||||||| || || |||| |||||| ||||||||    
T  29166959 gggatcaatctgagaaacgtttgacaaaaacagagaccattttgagttatcaatagagtccggtactaatttgaaaatttgttacaaaga 29167048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 330
Target Start/End: Complemental strand, 3436007 - 3435944
Alignment:
Q  267 tacaccacttattagataattgagcctaacacttgattagtccagtcgaccaaatcaagtttat 330  Q
    ||||||||||||||| ||||||  | |||||||||||||||||| | |||||||||||||||||    
T  3436007 tacaccacttattagttaattggacttaacacttgattagtccaattgaccaaatcaagtttat 3435944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 29469746 - 29469787
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaa 129  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  29469746 aaaatacaaaacaactaatagagtcagggaccaatctgagaa 29469787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 30786444 - 30786520
Alignment:
Q  152 attttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttactc 228  Q
    |||||||||| | ||||||||| |||| ||| |||| | ||||||||||||| | | |  |||||||||||||||||    
T  30786444 attttgagttattaatagagtcagggatcaatttgaaagtttggtacaaagacaaagatcaatttgatggtttactc 30786520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 31 - 230
Target Start/End: Complemental strand, 16997292 - 16997091
Alignment:
Q  31 gacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtc--ggggaccaatctgaga 128  Q
    ||||| ||| |||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||  | |||||||  |||||    
T  16997292 gacatgatgtcattaaccactaaataatattcaaaagacattgaaccattaaaactcaaaatacaaaacaactaatagagtcatgtggaccaacatgaga 16997193  T
Q  129 aacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttactc 228  Q
    ||||||| ||||||||||||||||||||||||| | ||||||||  || |||||||||| ||||||||||||||||||  || |||||||||||||||||    
T  16997192 aacatttgacaaagacaaagaccattttgagttattaatagagttaggaaccaaattgataatttggtacaaagatagggaccaatttgatggtttactc 16997093  T
Q  229 aa 230  Q
    ||    
T  16997092 aa 16997091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 33 - 229
Target Start/End: Original strand, 5074425 - 5074621
Alignment:
Q  33 cattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatctgagaaaca 132  Q
    |||||||||||||| ||| ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||| || |||||||||| |||||    
T  5074425 cattatgccattaaccaccaaataatatccaaaagacattgagtcattaacactcaaaatacaaaacaactaatagagtcaggaaccaatctgaaaaaca 5074524  T
Q  133 tttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttactca 229  Q
    ||| |||||||||  |||||||||||||| | ||||||| | |||||||| ||||||||||||||||||||||   |  ||||||||||||||||||    
T  5074525 tttgacaaagacagggaccattttgagttattaatagagacagggaccaatttgagaatttggtacaaagatatggatcaatttgatggtttactca 5074621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 42950552 - 42950341
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  |||||||||||||  ||||  ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| |||||  |||    
T  42950552 aataagatccaaaagacattatgttattagccactaaataatattcaaaagacattgaaccattaacactcaaaatacaaaacaattaacagagttaggg 42950453  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaattt 216  Q
    ||||||||||||||||||| |||| | || ||| ||||||||||| | |||| |||  |||| |||||||| |||||| |||||||| |  ||| |||||    
T  42950452 accaatctgagaaacatttgacaacggcatagatcattttgagttattaataaagttagggatcaaattgaaaatttgatacaaagacaagaaccaattt 42950353  T
Q  217 gatggtttactc 228  Q
    ||||||||||||    
T  42950352 gatggtttactc 42950341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 38225626 - 38225457
Alignment:
Q  34 attatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatctgagaaacat 133  Q
    |||||| ||||||  ||| |||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||| | ||||||||||| ||| ||    
T  38225626 attatgtcattaacaactgaataatatccaaaagacattgagccattaacacttaaaatgcaaaacaactaatagagtcagagaccaatctgaaaaatat 38225527  T
Q  134 ttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaaga 203  Q
    || ||||| || |||||||||||||||| | ||||||||  |||||||||||||||||||||||||||||    
T  38225526 ttgacaaataccaagaccattttgagttattaatagagtaagggaccaaattgagaatttggtacaaaga 38225457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 23488744 - 23488927
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    |||||||| |||||  ||||||| || ||| ||||||||||||||||||||||| |||  |||||||||||||||||||||||| |||||||||||  ||    
T  23488744 aataagatctaaaaaccattatgtcactaaccactaaataatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagtcaagg 23488842  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaa 201  Q
    |||||||||||||| |||| ||||||||| |||||||||||| || |  |||||||| |||||||| ||||||||||||| ||||    
T  23488843 accaatctgagaaatatttgacaaagacagagaccattttgaattattcatagagtcagggaccaatttgagaatttggttcaaa 23488927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 33 - 228
Target Start/End: Complemental strand, 11732788 - 11732593
Alignment:
Q  33 cattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatctgagaaaca 132  Q
    |||||||||||||| ||||||||||||| |||| || | |||  |||||||||||||||||||||||||| |||||||||   ||||||||| |||||||    
T  11732788 cattatgccattaaccactaaataatattcaaatgatattgagtcattaacactcaaaatacaaaacaacaaatagagtcaaagaccaatctaagaaaca 11732689  T
Q  133 tttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttactc 228  Q
     ||||||| |||| |||||||||||| || | ||||||||| | ||||||||||| ||||||||||||||| |   || |||||||||||||||||    
T  11732688 cttcacaatgacagagaccattttgaattattaatagagtcagtgaccaaattgaaaatttggtacaaagacatgtactaatttgatggtttactc 11732593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 42027154 - 42026968
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  ||||| ||||||| ||| || ||||||||||||||||||||||| |||  |||||| |||||||||||||||||| ||||||||||  ||    
T  42027154 aataagatccaaaaggcattatgtcataaaccactaaataatatccaaaagacattgagtcattaaaactcaaaatacaaaacaattaatagagtcacgg 42027055  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaaga 203  Q
    | |||| |||||||  ||| |||||||| || | ||||||||||| | |||| |||| |||||||| || | ||||||||| |||||    
T  42027054 atcaatttgagaaaggtttgacaaagacgaaaaacattttgagttattaataaagtcggggaccaatttaaaaatttggtaaaaaga 42026968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 18385934 - 18385780
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  ||||||||||||| |||||| ||||||||||||| ||||||| | |||  |||||||||| |||||||||||||| |||| |||| ||||    
T  18385934 aataagattcaaaagacattatgtcattaaccactaaataatattcaaaagatattgagtcattaacacttaaaatacaaaacaattaatggagttgggg 18385835  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtc 173  Q
    |||||||||| |||  ||| ||||||||  |||| |||||||||| | |||||||||    
T  18385834 accaatctgataaatgtttgacaaagac--agacaattttgagttattaatagagtc 18385780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 23488923 - 23489039
Alignment:
Q  86 tcaaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaatt 185  Q
    ||||||||||||||| |||||||||||  |||||||| |||||||||||| |||||||||| |||||||||||||| |  ||||||||  ||||||| ||    
T  23488923 tcaaaatacaaaaca-ctaatagagtcaaggaccaatttgagaaacatttgacaaagacaatgaccattttgagttattcatagagtcatggaccaattt 23489021  T
Q  186 gagaatttggtacaaaga 203  Q
    ||||||||||||||||||    
T  23489022 gagaatttggtacaaaga 23489039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 228 - 340
Target Start/End: Original strand, 26953862 - 26953973
Alignment:
Q  228 caatctagttcaacatgactctagaacctttctgcgggctacaccacttattagataattgagcctaacacttgattagtccagtcgaccaaatcaagtt 327  Q
    ||||||| ||| ||||||||||||||  |||||  |||||||||||||||||||||||||| | |||||||||||||||| || | ||||||||||||||    
T  26953862 caatctaattctacatgactctagaat-tttctatgggctacaccacttattagataattgggtctaacacttgattagttcaatggaccaaatcaagtt 26953960  T
Q  328 tattatccaacaa 340  Q
    |||||| ||||||    
T  26953961 tattattcaacaa 26953973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 41480706 - 41480624
Alignment:
Q  28 aaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagag 110  Q
    ||||| ||||||||||||| ||||||||||||| ||||||||| |||  ||||||||||||||||||||||||||||||||||    
T  41480706 aaagatattatgccattaaccactaaataatattcaaaagacattgagtcattaacactcaaaatacaaaacaactaatagag 41480624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 7905761 - 7905633
Alignment:
Q  100 aactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtaca 199  Q
    ||||||||||| | ||||||||||||| |||| ||| | ||||||| ||| ||||||||||| | ||||||||| ||||| || |||| |||||||||||    
T  7905761 aactaatagagccagggaccaatctgaaaaacgtttgataaagacagagatcattttgagttattaatagagtcagggactaatttgaaaatttggtaca 7905662  T
Q  200 aagatagaaacaaatttgatggtttactc 228  Q
    |||| || ||  |||||||||||||||||    
T  7905661 aagacaggaagtaatttgatggtttactc 7905633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 88 - 231
Target Start/End: Original strand, 41480735 - 41480878
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    |||||||||||||||||||||||||  ||| |||| ||| |||  ||| |||||||||   ||||||||||||| | |||| |||| |||| |||  |||    
T  41480735 aaaatacaaaacaactaatagagtcaaggatcaatatgaaaaatgtttgacaaagacagtaaccattttgagttattaataaagtcagggaacaatatga 41480834  T
Q  188 gaatttggtacaaagatagaaacaaatttgatggtttactcaat 231  Q
    |||||||||||||||||||  || || |||||| ||||||||||    
T  41480835 gaatttggtacaaagatagggactaaattgatgatttactcaat 41480878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 42373370 - 42373455
Alignment:
Q  27 aaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtc 112  Q
    |||||||||||| |||| || || ||||||||||  |||| | | ||||||||||||||||||||||| |||||| ||||||||||    
T  42373370 aaaagacattattccatgaaccattaaataatatttaaaaaatattgaaccattaacactcaaaatactaaacaagtaatagagtc 42373455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 95 - 228
Target Start/End: Original strand, 42950577 - 42950710
Alignment:
Q  95 aaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttg 194  Q
    |||||||||||||||||| | || |||| |||||||  ||| |||||||||| |||||||||||||| | ||||||||| | |||| | || | |||||     
T  42950577 aaaacaactaatagagtcagagatcaatatgagaaatgtttgacaaagacaatgaccattttgagttattaatagagtcagagacctatttaaaaattta 42950676  T
Q  195 gtacaaagatagaaacaaatttgatggtttactc 228  Q
     |||||||| | | || ||| |||||||||||||    
T  42950677 atacaaagacatagactaatctgatggtttactc 42950710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 5074391 - 5074318
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagtt 161  Q
    ||||||||||||| |||||| | ||||||| |||| |||||||||||| ||||||||| |||  ||||||||||    
T  5074391 aaaatacaaaacagctaataaaatcggggatcaatttgagaaacatttgacaaagacagagattattttgagtt 5074318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 34153439 - 34153551
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    ||||| |||||||| ||||||||||  | |||||| |||||||| ||| ||||||||| | | ||||||||||| | |||||||||   |||||| ||||    
T  34153439 aaaatgcaaaacaattaatagagtcaagaaccaatttgagaaacgtttgacaaagacata-atcattttgagttattaatagagtcatagaccaatttga 34153537  T
Q  188 gaatttggtacaaa 201  Q
     |||||||||||||    
T  34153538 taatttggtacaaa 34153551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 11732839 - 11732933
Alignment:
Q  103 taatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggta 197  Q
    |||||||||| ||||||||| ||||||||| || | |||||||| | |||||||||||| | | ||||||| ||||| ||  ||| |||||||||    
T  11732839 taatagagtcagggaccaatttgagaaacacttgataaagacaatggccattttgagttattactagagtcagggactaatatgataatttggta 11732933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 3507072 - 3507027
Alignment:
Q  294 aacacttgattagtccagtcgaccaaatcaagtttattatccaaca 339  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||||    
T  3507072 aacacttgattagtccaatggaccaaatcaagtttattacccaaca 3507027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 341
Target Start/End: Complemental strand, 3507768 - 3507654
Alignment:
Q  228 caatctagttcaacatgactctagaacctttctgcgggctacaccacttattag--ataattgagcctaacacttgattagtccagtcgaccaaatcaag 325  Q
    ||||||||||| |||  |||||||||| |||||   | || |||||||||||||  |||| |  |||||||||||||||||||||   |||||||||||     
T  3507768 caatctagttctacaccactctagaac-tttctttagactgcaccacttattagttataactaggcctaacacttgattagtccaaatgaccaaatcaaa 3507670  T
Q  326 tttattatccaacaac 341  Q
     |||||||||||||||    
T  3507669 cttattatccaacaac 3507654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 34153405 - 34153370
Alignment:
Q  33 cattatgccattaaacactaaataatatccaaaaga 68  Q
    |||||||||||||| |||||||||||||||||||||    
T  34153405 cattatgccattaaccactaaataatatccaaaaga 34153370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 25616648 - 25616718
Alignment:
Q  266 ctacaccacttattagataattgagcctaacacttgattagtccagtcgaccaaatcaagtttattatcca 336  Q
    |||||||||||||||  ||||||| ||||| |||| |||||| || | |||||||| || |||||||||||    
T  25616648 ctacaccacttattatgtaattgaccctaaaactttattagttcaatggaccaaataaaatttattatcca 25616718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 42373342 - 42373289
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaa 141  Q
    |||||||||||||| ||||| |||| ||||||||| |||||||| ||| |||||    
T  42373342 aaaatacaaaacaattaataaagtcagggaccaatgtgagaaacgtttgacaaa 42373289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 34 - 229
Target Start/End: Original strand, 33190056 - 33190251
Alignment:
Q  34 attatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatctgagaaacat 133  Q
    ||||||||||||| ||||||||||||||||||||||| |||  |||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||    
T  33190056 attatgccattaaccactaaataatatccaaaagacattgagacattaacacttaaaatacaaaacaactaatagagtcagagaccaatctgagaaacat 33190155  T
Q  134 ttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttactca 229  Q
    || ||||||||| |||||||||||| || | ||||||||| |||| |||||||| |||||| || ||||| | |||| |||| ||| |||||||||    
T  33190156 ttaacaaagacagagaccattttgaattattaatagagtcagggatcaaattgaaaatttgatataaagacataaaccaattcgatagtttactca 33190251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 35316053 - 35315841
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  ||||| ||||||| |||||| ||||||| ||||||||||||||| ||   || ||||||||||||||||||||||||||||||||| |||    
T  35316053 aataagatccaaaaggcattatgtcattaaccactaaaaaatatccaaaagacattgggtcaataacactcaaaatacaaaacaactaatagagtcaggg 35315954  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaattt 216  Q
    | ||||||||||||||||| ||||||||| |||| |||||||||| | ||||||||| |||||| |||||| ||||||||||||||  ||| |  |||||    
T  35315953 agcaatctgagaaacatttgacaaagacatagactattttgagttattaatagagtcagggaccgaattgacaatttggtacaaaggcagagattaattt 35315854  T
Q  217 gatggtttactca 229  Q
    | |||||||||||    
T  35315853 ggtggtttactca 35315841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 26073301 - 26073513
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  ||||| |||||| |||| || || |||||||||||||||| ||  |||| |  |||||||||||||||||||||| ||||| || | | |    
T  26073301 aataagatccaaaaggcattattccataaaccagtaaataatatccaaaacacgttgaatcgataacactcaaaatacaaaacaattaataaaggcagag 26073400  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaattt 216  Q
    |||||||| |||||||||| ||||||||| |||||||||||| || | ||||||||| ||||||||||||| ||||||||||||||| ||  || |||||    
T  26073401 accaatctaagaaacatttgacaaagacagagaccattttgaattattaatagagtcagggaccaaattgaaaatttggtacaaagacagtgaccaattt 26073500  T
Q  217 gatggtttactca 229  Q
    |||||||||||||    
T  26073501 gatggtttactca 26073513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 26097088 - 26097300
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  ||||| |||||| |||| || || |||||||||||||||| ||  |||| |  |||||||||||||||||||||| ||||| || | | |    
T  26097088 aataagatccaaaaggcattattccataaaccagtaaataatatccaaaacacgttgaatcgataacactcaaaatacaaaacaattaataaaggcagag 26097187  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaattt 216  Q
    |||||||| |||||||||| ||||||||| |||||||||||| || | ||||||||| ||||||||||||| ||||||||||||||| ||  || |||||    
T  26097188 accaatctaagaaacatttgacaaagacagagaccattttgaattattaatagagtcagggaccaaattgaaaatttggtacaaagacagtgaccaattt 26097287  T
Q  217 gatggtttactca 229  Q
    |||||||||||||    
T  26097288 gatggtttactca 26097300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 47215 - 47414
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  |||| |||||||  |||||| ||||||||||||| ||||||| | ||| || ||||||||||||||||||||||||||||||| || |||    
T  47215 aataagattcaaaatacattatatcattaaccactaaataatattcaaaagatattgagccgttaacactcaaaatacaaaacaactaatagaatcaggg 47314  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaattt 216  Q
    |||||||||| |||  ||  ||||||||| ||| ||||||||||| | ||||||| |   |||||| || | ||||||||||||||||||| || |||||    
T  47315 accaatctgaaaaatgttcgacaaagacagagatcattttgagttattaatagagacaaagaccaatttaataatttggtacaaagatagagaccaattt 47414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 33190022 - 33189881
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| ||| | ||||||||| ||||||||||||| | |||||||||   |||||| ||||    
T  33190022 aaaatgcaaaacaactaatagagtcagggaccaatctgagaaacttttgataaagacaaataccattttgagttattaatagagtcaaagaccaatttga 33189923  T
Q  188 gaatttggtacaaagatagaaacaaatttgatggtttactca 229  Q
    ||| |||||||||||| ||| || | ||||||||||||||||    
T  33189922 gaagttggtacaaagacagagaccagtttgatggtttactca 33189881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 32047373 - 32047231
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    |||||||||||||||||||||||| |||||  ||| |||||||  ||| ||||||||| ||||||||||||||| | ||||||||| | |||||| ||||    
T  32047373 aaaatacaaaacaactaatagagttggggaataatatgagaaaagtttgacaaagacagagaccattttgagttattaatagagtcagagaccaatttga 32047274  T
Q  188 gaatttggtacaaagatagaaacaaatttgatggtttactcaa 230  Q
    |||||||||||||||||||  || |||||| || |||||||||    
T  32047273 gaatttggtacaaagatagggaccaatttggtgatttactcaa 32047231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 7511277 - 7511076
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    |||||||| |||||  ||||||| ||||||  |||||||||||| |||| |||| ||||| ||||||||| |||||||||||||| |||||||||  |||    
T  7511277 aataagatttaaaaagcattatgtcattaactactaaataatattcaaa-gacattgaactattaacacttaaaatacaaaacaattaatagagttaggg 7511179  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaattt 216  Q
    ||||||||||||||| |||            |||||||||||||| | || ||||||   |||||| |||||||||||||||||||||||  || |||||    
T  7511178 accaatctgagaaacgttt------------gaccattttgagttattaacagagtcattgaccaatttgagaatttggtacaaagatagggaccaattt 7511091  T
Q  217 gatggtttactcaat 231  Q
    |||||||||||||||    
T  7511090 gatggtttactcaat 7511076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 88 - 224
Target Start/End: Original strand, 35316071 - 35316207
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    ||||| ||||||||||||||||||  |||||||||||||||||| ||| | |||||||  |||||||||||||| | ||||||||| |||||||| || |    
T  35316071 aaaatgcaaaacaactaatagagttagggaccaatctgagaaacgtttgagaaagacagggaccattttgagttattaatagagtcagggaccaatttaa 35316170  T
Q  188 gaatttggtacaaagatagaaacaaatttgatggttt 224  Q
    |||||||||||||||| ||| || |||||||| ||||    
T  35316171 gaatttggtacaaagacagagactaatttgatagttt 35316207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 88 - 206
Target Start/End: Complemental strand, 25658527 - 25658409
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    |||||||||||||||||||| ||||| ||| |||||||| |||| ||| ||||| |||| |||||||||||||| | || |||||| |||||||| ||||    
T  25658527 aaaatacaaaacaactaataaagtcgaggagcaatctgataaacgtttgacaaaaacaatgaccattttgagttattaacagagtcagggaccaatttga 25658428  T
Q  188 gaatttggtacaaagatag 206  Q
    |||||||||||||||||||    
T  25658427 gaatttggtacaaagatag 25658409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 527628 - 527496
Alignment:
Q  18 ataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggga 117  Q
    |||||||  ||||||| ||||| |||||| |||||||||||||| |||| ||| |||  ||||||||||||||||||||||||||||| | | ||   ||    
T  527628 ataagattcaaaagacgttatgtcattaaccactaaataatatctaaaaaacattgagtcattaacactcaaaatacaaaacaactaacaaaatcactga 527529  T
Q  118 ccaatctgagaaacatttcacaaagacaaagac 150  Q
    |||||||||||||||||| ||||||||| ||||    
T  527528 ccaatctgagaaacatttgacaaagacagagac 527496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 26073283 - 26073141
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    ||||| ||||||||||||||||| | |||||||||||||||||| ||| ||||||| |  |||||||||||||| | ||||||||  | |  ||| ||||    
T  26073283 aaaatgcaaaacaactaatagaggcagggaccaatctgagaaacgtttgacaaagaaagtgaccattttgagttattaatagagttagaggtcaatttga 26073184  T
Q  188 gaatttggtacaaagatagaaacaaatttgatggtttactcaa 230  Q
     ||||||||||||||| |  ||| |||||| ||||||||||||    
T  26073183 aaatttggtacaaagacatgaaccaatttggtggtttactcaa 26073141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 26097070 - 26096928
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    ||||| ||||||||||||||||| | ||||||||| |||||||| ||| ||||||| |  |||||||||||||| | ||||||||  | |  ||| ||||    
T  26097070 aaaatgcaaaacaactaatagaggcagggaccaatttgagaaacgtttgacaaagaaagtgaccattttgagttattaatagagttagaggtcaatttga 26096971  T
Q  188 gaatttggtacaaagatagaaacaaatttgatggtttactcaa 230  Q
     ||||||||||||||| |  ||| |||||| ||||||||||||    
T  26096970 aaatttggtacaaagacatgaaccaatttggtggtttactcaa 26096928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 89 - 229
Target Start/End: Complemental strand, 36642746 - 36642606
Alignment:
Q  89 aaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgag 188  Q
    |||| |||||||||||||| | ||  |||||||||| | | || ||| ||||||||| |||  || ||||||| | ||||||||| |||||||| ||||     
T  36642746 aaatgcaaaacaactaatacattcacggaccaatctaaaacacttttgacaaagacagagatgatgttgagttattaatagagtcagggaccaatttgaa 36642647  T
Q  189 aatttggtacaaagatagaaacaaatttgatggtttactca 229  Q
    ||||||||||||||||||| || ||||| ||| ||||||||    
T  36642646 aatttggtacaaagatagagaccaatttaatgatttactca 36642606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 21297799 - 21297712
Alignment:
Q  142 gacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttactca 229  Q
    ||||||||| |||||||||| | ||||||||| | ||| ||||| ||||||||||||||||| ||  || ||||||||||||||||||    
T  21297799 gacaaagactattttgagttattaatagagtcagagactaaattaagaatttggtacaaagacagggaccaatttgatggtttactca 21297712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 25658545 - 25658651
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  |||| ||||||||| ||||  |||||||||||||| |||||||  |||| ||||||||||||||||| ||||||||||||| | || ||     
T  25658545 aataagatccaaaacacattatgcaattatccactaaataatatc-aaaagacgttgaatcattaacactcaaaatataaaacaactaataaaatcagga 25658643  T
Q  117 accaatct 124  Q
    ||||||||    
T  25658644 accaatct 25658651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 18791793 - 18791867
Alignment:
Q  263 gggctacaccacttattagataattgagcctaacacttgattagtccagtcgaccaaatcaagtttattatccaa 337  Q
    ||||||||||||||||||  |||||| ||||||||||| || |||||| | ||||||||||||| ||||||||||    
T  18791793 gggctacaccacttattatttaattgggcctaacacttaataagtccaatggaccaaatcaagtctattatccaa 18791867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 32056739 - 32056651
Alignment:
Q  114 gggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaaga 203  Q
    |||||| | ||||||||  ||| |||||||||||||||||||| |||| | ||||||||  ||||||||||||| |||||||||||||||    
T  32056739 gggacctaactgagaaatgtttgacaaagacaaagaccattttaagttattaatagagt-agggaccaaattgaaaatttggtacaaaga 32056651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 5964232 - 5964314
Alignment:
Q  123 ctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagata 205  Q
    ||||||||| ||| | |||||||  |||||||||||||| | || |||||| | ||||||||||||||||||||| |||||||    
T  5964232 ctgagaaacgtttgataaagacagtgaccattttgagttattaaaagagtcggagaccaaattgagaatttggtataaagata 5964314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 32056870 - 32056932
Alignment:
Q  137 acaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtaca 199  Q
    ||||||||| | |||||||| |||| | |||| ||||||||||||||||||||||||||||||    
T  32056870 acaaagacagaaaccattttaagttattaataaagtccgggaccaaattgagaatttggtaca 32056932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 5964090 - 5963990
Alignment:
Q  128 aaacatttcacaaagacaaagaccat-tttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttac 226  Q
    |||||||| ||| |||||  |||||| |||||||| | ||||||||| | ||| ||||||||||||||||||||||| | | || ||| |||||||||||    
T  5964090 aaacatttaacagagacagggaccatgtttgagttattaatagagtcagagactaaattgagaatttggtacaaagaca-acaccaatctgatggtttac 5963992  T
Q  227 tc 228  Q
    ||    
T  5963991 tc 5963990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 7511295 - 7511348
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaa 141  Q
    ||||||||||| |||||||||| |||||||||||| | | |||||||| |||||    
T  7511295 aaaatacaaaataactaatagaatcggggaccaatttaaaaaacatttaacaaa 7511348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 49784730 - 49784524
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  |||||||||||||||||||| ||||| ||||||| ||||| ||| |||||||| |||||||||||||||||||||||||| ||||| |||    
T  49784730 aataagattcaaaagacattatgccattaaccactacataatattcaaaacacattgaaccatcaacactcaaaatacaaaacaactaattgagtcaggg 49784631  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaattt 216  Q
    |||||||||||||||| || ||||||||  | ||||||||||||| | ||||||||| ||||| ||||||| ||||| ||||||||| ||  || |||||    
T  49784630 accaatctgagaaacacttgacaaagac--ataccattttgagttattaatagagtcagggactaaattgaaaatttagtacaaagacagggactaattt 49784533  T
Q  217 gatggttta 225  Q
    ||| |||||    
T  49784532 gatagttta 49784524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 27134010 - 27134166
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  |||||||||||||||||||| ||||||||||||||||||| ||| |||  |||||||||||||||||||||||||||||||||||| | |    
T  27134010 aataagatccaaaagacattatgccattaaccactaaataatatccaaaatacattgagtcattaacactcaaaatacaaaacaactaatagagtcagag 27134109  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtc 173  Q
    ||||||||||||||||||| |||||||||   ||||||||||||| | |||||||||    
T  27134110 accaatctgagaaacatttgacaaagacatgaaccattttgagttattaatagagtc 27134166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 23329507 - 23329296
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  ||||| ||||||| |||||| ||||||||||||| | ||||||| ||||| ||||||||| |||||||||||||||||||| |||  | |    
T  23329507 aataagatccaaaaggcattatgtcattaaccactaaataatattctaaagacattgaactattaacactaaaaatacaaaacaactaataaagttagag 23329408  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaattt 216  Q
    ||||||||||| ||| ||| ||||| ||| ||||||||| ||| | | ||||||||| || ||||||||||||||||| ||||||||||  ||| |||||    
T  23329407 accaatctgagtaacgtttgacaaacacagagaccatttcgaggtattaatagagtcaggaaccaaattgagaatttgatacaaagataagaaccaattt 23329308  T
Q  217 gatggtttactc 228  Q
    ||||||||||||    
T  23329307 gatggtttactc 23329296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 4067037 - 4067222
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  ||||||||||||| |||| |  || ||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||| ||||||  ||    
T  4067037 aataagatccaaaagacattatgtcatttactacgaaataatatccaaaagacattgagccattaacactcaaaataaaaaacaattaacagagtcatgg 4067136  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaaga 203  Q
    ||||||||||||||||||| ||||||||   |||||||||||||| | |||||||||   |||||| || | |||||||||||||||    
T  4067137 accaatctgagaaacatttgacaaagac-gtgaccattttgagttattaatagagtcaatgaccaatttaaaaatttggtacaaaga 4067222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 34535471 - 34535659
Alignment:
Q  41 cattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaac-----aactaatagagtcggggaccaatctgagaaacattt 135  Q
    |||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||     ||||||||||||| | |||||||||||||||||| |    
T  34535471 cattaaccactaaataatattcaaaagacattgagccattaacactcaaaatacaaaacaactaaactaatagagtcagcgaccaatctgagaaacatat 34535570  T
Q  136 cacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggttt 224  Q
     | ||||| ||  | ||||||||||| | |||| |||| ||||||||||||| ||||| ||||||| | ||  || |||||||||||||    
T  34535571 gataaagataagaatcattttgagttattaataaagtcagggaccaaattgaaaatttagtacaaatagagggaccaatttgatggttt 34535659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 48 - 208
Target Start/End: Complemental strand, 38208436 - 38208276
Alignment:
Q  48 cactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaa 147  Q
    ||||||||||||||||| ||||| |||  |||| ||||||||||||||||| || |||||| |||   ||||||||||||||| |||| ||||||| | |    
T  38208436 cactaaataatatccaagagacattgagtcatttacactcaaaatacaaaataattaatagtgtcaatgaccaatctgagaaatatttgacaaagatata 38208337  T
Q  148 gaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaa 208  Q
     ||||||||||||| | ||||||||| | ||||||||| | ||||| ||| ||||| ||||    
T  38208336 aaccattttgagttatcaatagagtcagagaccaaattaaaaatttagtataaagacagaa 38208276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 327
Target Start/End: Original strand, 36815648 - 36815746
Alignment:
Q  228 caatctagttcaacatgactctagaacctttctgcgggctacaccacttattagataattgagcctaacacttgattagtccagtcgaccaaatcaagtt 327  Q
    |||||||| || |||  |||||||||| |||||  ||||||||||||||||| | |||||| ||||||||||||||||||||| | ||||||||||||||    
T  36815648 caatctagctctacaccactctagaac-tttctatgggctacaccacttatttgttaattgggcctaacacttgattagtccaatggaccaaatcaagtt 36815746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 51 - 201
Target Start/End: Original strand, 33321227 - 33321377
Alignment:
Q  51 taaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagac 150  Q
    |||||||||||||||||||| |||  ||||| ||||||||||||||||||| |||||||| |   ||||||| ||| |||  ||| ||||||||   |||    
T  33321227 taaataatatccaaaagacaatgagtcattatcactcaaaatacaaaacaaataatagagacaatgaccaatttgaaaaaagtttgacaaagacgtggac 33321326  T
Q  151 cattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaa 201  Q
     |||||||||| | ||||||||| |  ||||| || | |||||||||||||    
T  33321327 tattttgagttattaatagagtcagaaaccaatttaaaaatttggtacaaa 33321377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 27133949 - 27133844
Alignment:
Q  98 acaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggta 197  Q
    ||||||||||||||  | | ||||  |||||||| ||| ||||||||| ||||||||||||||| | |||| |||| |||| ||| || |||||||||||    
T  27133949 acaactaatagagttagtgtccaacatgagaaacgtttgacaaagacatagaccattttgagttattaataaagtcagggatcaatttaagaatttggta 27133850  T
Q  198 caaaga 203  Q
    ||||||    
T  27133849 caaaga 27133844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 33321175 - 33321071
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    |||||||||||||||||||||||||||||| |||| | |||||  ||| ||||||||| ||| |||||| | || | |||||||||   |||||| ||||    
T  33321175 aaaatacaaaacaactaatagagtcggggatcaatataagaaatgtttgacaaagacagagatcattttaaattattaatagagtcaatgaccaatttga 33321076  T
Q  188 gaatt 192  Q
    |||||    
T  33321075 gaatt 33321071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 4067010 - 4066923
Alignment:
Q  100 aactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    |||| |||||||||  |||||||||||||||| ||| |||||||||  ||||||||||| || | ||||||||| |||||||| ||||    
T  4067010 aacttatagagtcgatgaccaatctgagaaacttttgacaaagacagtgaccattttgaattattaatagagtcagggaccaatttga 4066923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 7481087 - 7481032
Alignment:
Q  176 ggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttactcaat 231  Q
    |||||||||| ||||||||||||||||||||  || ||||||||||||||||||||    
T  7481087 ggaccaaattaagaatttggtacaaagatagtgactaatttgatggtttactcaat 7481032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 339
Target Start/End: Complemental strand, 32238507 - 32238411
Alignment:
Q  241 catgactctagaacctttctgcgggctacaccacttattagataattgagcctaacacttgattagtccagtcgaccaaatcaagtttattatccaaca 339  Q
    |||||||||||||| |||||   |||||||||| ||| ||  |||||| ||||||||||||||| ||||| |  |||||||||||||||||||||||||    
T  32238507 catgactctagaac-tttctatcggctacaccatttactatctaattgggcctaacacttgatt-gtccaatgaaccaaatcaagtttattatccaaca 32238411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 2464189 - 2464278
Alignment:
Q  139 aaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttactc 228  Q
    |||||||| ||| |||||||||| | |||||||||  ||||||| |||||||||||||||||| | | |||| |||||| || |||||||    
T  2464189 aaagacaatgactattttgagttattaatagagtcatggaccaatttgagaatttggtacaaatacaaaaactaatttggtgatttactc 2464278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 229
Target Start/End: Original strand, 7481186 - 7481291
Alignment:
Q  124 tgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtt 223  Q
    |||||||| ||| ||||||| | |||||||||| |||| | |||||||||   |||||  ||||||||||| |||||| | ||| || ||||||||||||    
T  7481186 tgagaaacgtttgacaaagatagagaccattttaagttattaatagagtcgaagaccagtttgagaatttgttacaaatacagagaccaatttgatggtt 7481285  T
Q  224 tactca 229  Q
    ||||||    
T  7481286 tactca 7481291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 34535429 - 34535316
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    ||||| ||||| |||||||| |||| ||||||||| |||||||| ||| |||||  ||  ||||||||| |||| | |||||||||  |||| || ||||    
T  34535429 aaaatgcaaaataactaatacagtcagggaccaatttgagaaacgtttgacaaattcagtgaccattttaagttattaatagagtcaaggactaatttga 34535330  T
Q  188 gaatttggtacaaa 201  Q
     |||||||||||||    
T  34535329 aaatttggtacaaa 34535316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 38208523 - 38208583
Alignment:
Q  165 aatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggttta 225  Q
    ||||||||| |||||||| |||||||||||||||||||| ||| || |||||| |||||||    
T  38208523 aatagagtcagggaccaatttgagaatttggtacaaagacagagaccaatttggtggttta 38208583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 2464168 - 2464054
Alignment:
Q  114 gggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaa 213  Q
    |||||| | ||||||||| ||| |||||||||     ||||||||||| | ||| ||||| ||||||||||| | ||||| |||||||||||   || ||    
T  2464168 gggacctaactgagaaacgtttgacaaagacatgagtcattttgagttattaatggagtctgggaccaaattaaaaatttagtacaaagatatggaccaa 2464069  T
Q  214 tttgatggtttactc 228  Q
    |||||||||||||||    
T  2464068 tttgatggtttactc 2464054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 38208489 - 38208437
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagac 69  Q
    ||||||||  ||||||||||||| |||||| ||||||||||||||||| ||||    
T  38208489 aataagatccaaaagacattatgtcattaatcactaaataatatccaagagac 38208437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 228
Target Start/End: Original strand, 49784756 - 49784892
Alignment:
Q  95 aaaacaactaatagagtcggggaccaatctgagaaacatt---tcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaat 191  Q
    |||| ||||||||||||| | |||||||||||||||||||   | | ||| |||  |   |||||||||| | ||||||||| ||||||||  ||||||     
T  49784756 aaaaaaactaatagagtcagagaccaatctgagaaacatttgataaaaaaaacatggctaattttgagttattaatagagtcagggaccaatatgagaac 49784855  T
Q  192 ttggtacaaagatagaaacaaatttgatggtttactc 228  Q
    |||||||||||| |   || |||||| ||||||||||    
T  49784856 ttggtacaaagacatggaccaatttggtggtttactc 49784892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 20993958 - 20993854
Alignment:
Q  124 tgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtt 223  Q
    |||||||||||| ||||||||  | || |||||||||| | |||||| ||  ||||||| ||||||||||  || ||| ||||| |  ||||||||| ||    
T  20993958 tgagaaacatttgacaaagacggaaactattttgagttattaatagaatcatggaccaagttgagaattttatataaaaatagagatcaatttgatgatt 20993859  T
Q  224 tactc 228  Q
    |||||    
T  20993858 tactc 20993854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 16435014 - 16434804
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    |||||||| |||||  |||||| | ||||| ||||||||||||||||||| ||| ||| | |||||||||||||||||||||||||||||| ||||  ||    
T  16435014 aataagatctaaaatgcattatactattaaccactaaataatatccaaaatacattgagctattaacactcaaaatacaaaacaactaataaagtcaagg 16434915  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaattt 216  Q
    ||||||||||||||  ||| ||||||||| | |||||||| |||| | |||||||| |  |||||| |||||||||||||||||||| ||| || |||||    
T  16434914 accaatctgagaaatttttgacaaagacagataccatttttagttattaatagagt-catgaccaatttgagaatttggtacaaagagagagactaattt 16434816  T
Q  217 gatggtttactc 228  Q
    ||||||||||||    
T  16434815 gatggtttactc 16434804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 67497 - 67683
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  ||||| ||||| ||||| || |||||||||||||||||||| || ||| | ||||||||| ||||||||||||||||||||||||| |||    
T  67497 aataagattcaaaaggcattaggccatcaaccactaaataatatccaaaaggcattgatcaattaacactgaaaatacaaaacaactaatagagtcaggg 67596  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaaga 203  Q
    |||||||||| |||| | | ||||||||  |||| |||||||||| | |||| | || | |||||| |||| |||||||||||||||    
T  67597 accaatctgaaaaacgtatgacaaagacggagactattttgagttattaataaaatcagagaccaatttgaaaatttggtacaaaga 67683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 10388376 - 10388591
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaacta--atagagtcgg 114  Q
    ||||||||  |||||||||||||||||||| ||| ||||||||||||||||||| |||  |||||| |||||||||||||||||||||  |||||||| |    
T  10388376 aataagatccaaaagacattatgccattaaccacaaaataatatccaaaagacattgagtcattaatactcaaaatacaaaacaactaatatagagtccg 10388475  T
Q  115 ggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaat 214  Q
    ||| | || | |||||||| | |||||||||  || |||||||| || | ||||||||  |  ||||| |||||||| |||||||||||  || || |||    
T  10388476 ggatcgatataagaaacatctgacaaagacatggatcattttgatttattaatagagttagaaaccaatttgagaatatggtacaaagacggagaccaat 10388575  T
Q  215 ttgatggtttactcaa 230  Q
    || || ||||||||||    
T  10388576 ttaatagtttactcaa 10388591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 10388358 - 10388243
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    ||||||||||||| ||||||||||| | ||||||| |||||||||||| ||||||||| ||||||||||||||| | ||||||||| | |||||  || |    
T  10388358 aaaatacaaaacacctaatagagtcagagaccaatatgagaaacatttaacaaagacagagaccattttgagttattaatagagtcagagaccagtttaa 10388259  T
Q  188 gaatttggtacaaaga 203  Q
     ||||||||| |||||    
T  10388258 aaatttggtataaaga 10388243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 3687763 - 3687627
Alignment:
Q  92 tacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagacca---ttttgagttgtaaatagagtccgggaccaaattgag 188  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| | ||   ||||||||| | || ||||||  ||| ||| |||||    
T  3687763 tacaaaacaactaatagagttggggaccaatctgagaaacgtttgacaaagacaaataacatttttttgagttattaacagagtcatggatcaatttgag 3687664  T
Q  189 aatttggtacaaagatagaaacaaatttgatggttta 225  Q
    |||||| |||||||| ||| || ||||| ||| ||||    
T  3687663 aatttgatacaaagacagagaccaatttaatgattta 3687627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 67479 - 67364
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    |||||||||||||| ||| |||||  |||||||||||||||||  ||| | ||| |||  ||||||||| |||| | |||| |||| |||||||| ||||    
T  67479 aaaatacaaaacaattaacagagtgagggaccaatctgagaaatgtttgataaaaacagggaccattttaagttattaatatagtcagggaccaatttga 67380  T
Q  188 gaatttggtacaaaga 203  Q
    ||||||||||||||||    
T  67379 gaatttggtacaaaga 67364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 3687820 - 3687894
Alignment:
Q  87 caaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagtt 161  Q
    ||||||||||||||||||| | |||||||| |||||||||||||| ||| ||||| ||| |||||||||||||||    
T  3687820 caaaatacaaaacaactaacaaagtcgggggccaatctgagaaacgtttgacaaaaacagagaccattttgagtt 3687894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 128 - 229
Target Start/End: Original strand, 30122812 - 30122913
Alignment:
Q  128 aaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttact 227  Q
    |||||||| ||||||||| ||||||||||||||| | |||| |||  |||||||| ||||||||||| |||||||| || ||| ||||| || |||| ||    
T  30122812 aaacatttgacaaagacagagaccattttgagttattaataaagttagggaccaatttgagaatttgatacaaagacaggaaccaatttaatagtttcct 30122911  T
Q  228 ca 229  Q
    ||    
T  30122912 ca 30122913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 30847782 - 30847875
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagag 110  Q
    ||||| ||| |||| | |||||| |||||| |||||||||  |||||||| ||| |||| |||||||||| |||||||||| ||||||||||||    
T  30847782 aataaaatacaaaaaatattatgtcattaaccactaaatagaatccaaaaaacattgaatcattaacacttaaaatacaaagcaactaatagag 30847875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 6714521 - 6714601
Alignment:
Q  123 ctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaaga 203  Q
    |||||||| | || |||||||||||||||||||||| || | |||| |||| | |||||| ||||||||||||||||||||    
T  6714521 ctgagaaataattgacaaagacaaagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaaga 6714601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 30847764 - 30847624
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    ||||||||||||||||||||||||  | |||||||||||||||| ||| ||||||| |  ||||||||| | || | |||||| ||   |||||| |  |    
T  30847764 aaaatacaaaacaactaatagagttagagaccaatctgagaaacgtttgacaaagatagggaccattttaaattattaatagaatcatagaccaattcaa 30847665  T
Q  188 gaatttggtacaaagatagaaacaaatttgatggtttactc 228  Q
    |||||||||| ||||| | | || ||||| |||||||||||    
T  30847664 gaatttggtataaagacatagaccaatttaatggtttactc 30847624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 6169450 - 6169375
Alignment:
Q  149 accattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggttt 224  Q
    ||||||||||||| | |||| ||||   ||||||||||||||||| ||| ||||||||| || |||||||||||||    
T  6169450 accattttgagttattaataaagtcattgaccaaattgagaatttagtataaagatagagaccaatttgatggttt 6169375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 13932717 - 13932927
Alignment:
Q  17 aataagatataaaagacattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgggg 116  Q
    ||||||||  |||| | |||||| |||||| ||||||||| |||  |||||| | ||| ||||||||||||||||||||||| |||||||||||||| ||    
T  13932717 aataagattcaaaatatattatgtcattaaccactaaatagtattaaaaagatattgagccattaacactcaaaatacaaaataactaatagagtcgtgg 13932816  T
Q  117 accaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaattt 216  Q
    | ||||||||||||| ||| |||||||||  |||||||||||||| | |||||||||  | | ||| |||||||||| ||||||| ||||  || |||||    
T  13932817 atcaatctgagaaacgtttgacaaagacattgaccattttgagttattaatagagtcgagaatcaatttgagaatttagtacaaaaatagggaccaattt 13932916  T
Q  217 gatggtttact 227  Q
    |||||||||||    
T  13932917 gatggtttact 13932927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 33 - 227
Target Start/End: Complemental strand, 36150926 - 36150733
Alignment:
Q  33 cattatgccattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatctgagaaaca 132  Q
    |||||||||||||| ||||||||||||||||||||||| |||  || |||||||| ||||||||||| |||||||||| | | ||| |||||||||||||    
T  36150926 cattatgccattaaccactaaataatatccaaaagacattgagtcaataacactc-aaatacaaaac-actaatagagccagtgacaaatctgagaaaca 36150829  T
Q  133 tttcac-aaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttact 227  Q
    ||| || |||||||   ||||||||||||| |  |||||||  |||||||| |||||||||| ||||| ||||||  || |||||| || ||||||    
T  36150828 tttgacaaaagacatgaaccattttgagttattcatagagttagggaccaatttgagaatttagtacatagatagggaccaatttggtgatttact 36150733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 36150960 - 36151073
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    |||||||||||||||||| ||||||||||| |||| |||||||| ||| ||||||||| ||||||||||||||| |  |||||||  || ||||| ||||    
T  36150960 aaaatacaaaacaactaagagagtcggggatcaatttgagaaacgtttgacaaagacagagaccattttgagttattcatagagttaggaaccaatttga 36151059  T
Q  188 gaatttggtacaaa 201  Q
    ||||||||||||||    
T  36151060 gaatttggtacaaa 36151073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 8999708 - 8999898
Alignment:
Q  41 cattaaacactaaataatatccaaaagacagtgaaccattaacactcaaaatacaa---aacaactaatagagtcggggaccaatctgagaaacatttca 137  Q
    |||||| || |||||||||||||||||||| ||||||||||||  || ||||| ||   |||||||||||||||| |||| |||||| |||| ||||| |    
T  8999708 cattaaccattaaataatatccaaaagacattgaaccattaacgttcgaaatataaaacaacaactaatagagtcagggatcaatctcagaagcatttga 8999807  T
Q  138 caaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttactc 228  Q
     | || ||  ||||||||||| |  | ||| |||||   |||||||||||||||||| |||||||| |  ||  |||||||||||||||||    
T  8999808 tagaggcatggaccattttgaatcattaatggagtcacagaccaaattgagaatttgatacaaagacaataatcaatttgatggtttactc 8999898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 17990843 - 17990743
Alignment:
Q  128 aaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttact 227  Q
    |||| ||| ||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||| ||| |||| |   || |||||| |||||||||    
T  17990843 aaacttttgacaaaaacaaagaccattttgagttattaatagagtcagggaccaaattgagaatttgatacgaagacaatgaccaatttggtggtttact 17990744  T
Q  228 c 228  Q
    |    
T  17990743 c 17990743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 20730528 - 20730450
Alignment:
Q  33 cattatgccattaaacactaaataatatccaaaaga---cagtgaaccattaacactcaaaatacaaaacaactaatag 108  Q
    ||||||| |||||| |||||||||||||||||||||   || ||||||||| |||||||||||||||||||| ||||||    
T  20730528 cattatgtcattaaccactaaataatatccaaaagaagacattgaaccattgacactcaaaatacaaaacaattaatag 20730450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 22843846 - 22843767
Alignment:
Q  124 tgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaaga 203  Q
    ||||||| |||| ||||||||| |||||||||||| || | |||||| |  ||||||||||||| |||||||||||||||    
T  22843846 tgagaaatatttgacaaagacagagaccattttgaattattaatagaatgagggaccaaattgaaaatttggtacaaaga 22843767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 8999665 - 8999597
Alignment:
Q  89 aaatacaaaacaactaatagagtcggggaccaatctgagaaac-atttcacaaagacaaagaccatttt 156  Q
    |||||||||||||||||||||| ||| ||||||||| | |||| |||| ||||| ||| ||||||||||    
T  8999665 aaatacaaaacaactaatagagccggagaccaatctaaaaaacgatttgacaaaaacatagaccatttt 8999597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 20730562 - 20730671
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattga 187  Q
    ||||||||||||||||||||||||  | ||||||||| | |||| |||      ||||||||||||||| |||| | |||||||||  ||||||| || |    
T  20730562 aaaatacaaaacaactaatagagtatgagaccaatctaaaaaacgttt------gacaaagaccattttaagttattaatagagtcatggaccaatttaa 20730655  T
Q  188 gaatttggtacaaaga 203  Q
    | |||||||| |||||    
T  20730656 gtatttggtataaaga 20730671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 38040107 - 38040039
Alignment:
Q  88 aaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccatttt 156  Q
    |||||||||||||||||||||||| |||||  ||||  |||||| ||| |||||| || |||| |||||    
T  38040107 aaaatacaaaacaactaatagagttggggattaatcaaagaaacttttgacaaaggcagagacaatttt 38040039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 61 - 203
Target Start/End: Original strand, 70764 - 70906
Alignment:
Q  61 ccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagt 160  Q
    |||||||||| |||  |||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| |||||||||  ||||||||||||     
T  70764 ccaaaagacattgagtcattaacactcaaaatacaaaacaactaatagagtcagagaccaatctgagaaacgtttgacaaagacatggaccattttgagc 70863  T
Q  161 tgtaaatagagtccgggaccaaattgagaatttggtacaaaga 203  Q
    | | ||||||||| | |||||| |||||||||| |||||||||    
T  70864 tattaatagagtcagagaccaatttgagaatttagtacaaaga 70906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 70724 - 70614
Alignment:
Q  92 tacaaaacaactaatagagtcggggaccaatctgagaaacatttcacaaagacaaagaccattttgagttgtaaatagagtccgggaccaaattgagaat 191  Q
    ||||||||||| |||| || ||||| |||||||||||||| ||| ||||||||| | | |||||| |||| | |||| |||  |||||||| ||||||||    
T  70724 tacaaaacaacaaatatagccgggggccaatctgagaaacgtttgacaaagacagaaatcattttaagttattaataaagtgagggaccaatttgagaat 70625  T
Q  192 ttggtacaaag 202  Q
    |  ||||||||    
T  70624 tgagtacaaag 70614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 337
Target Start/End: Original strand, 1402 - 1449
Alignment:
Q  290 gcctaacacttgattagtccagtcgaccaaatcaagtttattatccaa 337  Q
    |||||||||||| |||||||| | ||||||||||||||||||||||||    
T  1402 gcctaacacttggttagtccaatggaccaaatcaagtttattatccaa 1449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 8617 - 8660
Alignment:
Q  27 aaaagacattatgccattaaacactaaataatatccaaaagaca 70  Q
    |||||| |||||| |||||| |||||||||||||||||||||||    
T  8617 aaaagatattatgtcattaaccactaaataatatccaaaagaca 8660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 8705 - 8784
Alignment:
Q  152 attttgagttgtaaatagagtccgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttactcaat 231  Q
    |||||||||| | ||||||||  ||| |||||||||||| ||  || ||||||||| || ||||| ||||||||||||||    
T  8705 attttgagttattaatagagttagggtccaaattgagaacttaatataaagatagagaccaatttaatggtttactcaat 8784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University