View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7253_low_8 (Length: 333)
Name: NF7253_low_8
Description: NF7253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7253_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 18823353 - 18823161
Alignment:
| Q |
17 |
gataggaggaagaaagagaaaaactggaataaaagataatactaacataaattaaatcatgatttacatatttacccttcttctctaattgttttccaaa |
116 |
Q |
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| T |
18823353 |
gataggaggaagaaagagaaaaactggaataaaagagaatactaacataaattaaatcatgatttacatatttacccttcttctctaattgttttccaaa |
18823254 |
T |
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| Q |
117 |
aggaaagttggggtaatgttgtcaaaacatacaaggtgttccatgccaaaaaacaccttcataaaagtgagagggtgtgttatagcataaccc |
209 |
Q |
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| T |
18823253 |
aggaaagctggggtaatgttgtcaaaacatacaaggtgttccatgctaaaacacaccttcataaaagtgagagggtgtgttatagcataaccc |
18823161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 18823805 - 18823992
Alignment:
| Q |
22 |
gaggaagaaagagaaaaactggaataaaagataatactaacataaattaaatcatgatttacatatttacccttcttctctaattgttttccaaaaggaa |
121 |
Q |
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| T |
18823805 |
gaggaagagagagaaaagctgaaataaaagagcatattaacataaattaaatcatgatttatgtatttacccttctttt-taattgtttttcaaaaggaa |
18823903 |
T |
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| Q |
122 |
agttggggtaatgttgtcaaaacatacaaggtgttccatgccaaaaaacaccttcataaaagtgagagggtgtgttatagcataaccct |
210 |
Q |
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| T |
18823904 |
agttggggtatttttgtcaaaacataaaaggtgttccatgctaaaacacaccttcataaaagtgagagggtgtgttatagcataaccct |
18823992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 17721832 - 17721901
Alignment:
| Q |
135 |
ttgtcaaaacatacaaggtgttccatgccaaaaaacaccttcataaaagtgagagggtgtgttatagcat |
204 |
Q |
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| T |
17721832 |
ttgtcaaaacattaaaggtgttcaatgctaaaacacaccttcacaaaagtgagtgggtgtgttgtagcat |
17721901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 210 - 321
Target Start/End: Complemental strand, 30098606 - 30098491
Alignment:
| Q |
210 |
ttttaagtatttcattcttttggacag----aatacatttatccctcagtcaaaatgaaatattgtgagttttgcttgcaaactaggctgcaaatagaag |
305 |
Q |
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| T |
30098606 |
ttttaagtatttcattcttttggacagtaataatacatttatccctcagtcaaaatgaaatattgtgagttttgcttgcaaactaggctgcaaatagaag |
30098507 |
T |
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| Q |
306 |
ctgtactatgcagaat |
321 |
Q |
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| T |
30098506 |
ctgtactatgcagaat |
30098491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 59 - 210
Target Start/End: Original strand, 18343278 - 18343429
Alignment:
| Q |
59 |
taacataaattaaatcatgatttacatatttacccttcttctctaattgttttccaaaaggaaagttggggtaatgttgtcaaaacatacaaggtgttcc |
158 |
Q |
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||||| |||||||| |||||||||||||||| |||||| | |||| ||||||| ||||||||||||||||| | ||||| ||||| | ||||||||| |
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| T |
18343278 |
taacacaaattaaaccatgatttacatatttgcccttcatttctacttgtttttaaaaaggaaagttggggtgtttttgtccaaacaaaaaaggtgttca |
18343377 |
T |
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| Q |
159 |
atgccaaaaaacaccttcataaaagtgagagggtgtgttatagcataaccct |
210 |
Q |
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|||| |||| |||||||||||||| ||||||||||| |||||||||||||| |
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| T |
18343378 |
atgctaaaacacaccttcataaaattgagagggtgttgtatagcataaccct |
18343429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 26616622 - 26616721
Alignment:
| Q |
31 |
agagaaaaactggaataaaagataatactaacataaattaaatcatgatttacatatttacccttcttctctaattgttttccaaaaggaaagttggggt |
130 |
Q |
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|||||||| || ||||||| | |||| |||||||||||||||| |||||||| || ||| ||||| ||| || ||||||| ||||||||||||||||| |
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| T |
26616622 |
agagaaaagttgaaataaaaaaaaatattaacataaattaaatcgtgatttacgtaatta-ccttcatctttacttgtttttaaaaaggaaagttggggt |
26616720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 26722550 - 26722649
Alignment:
| Q |
31 |
agagaaaaactggaataaaagataatactaacataaattaaatcatgatttacatatttacccttcttctctaattgttttccaaaaggaaagttggggt |
130 |
Q |
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| T |
26722550 |
agagaaaagttgaaataaaaaaaaatattaacataaattaaatcgtgatttacgtaatta-ccttcatctttacttgtttttaaaaaggaaagttggggt |
26722648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 11210179 - 11210248
Alignment:
| Q |
135 |
ttgtcaaaacatacaaggtgttccatgccaaaaaacaccttcataaaagtgagagggtgtgttatagcat |
204 |
Q |
| |
|
||||| |||||||||||||||| |||| |||| ||||||||||||||| | | ||||||||| |||||| |
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| T |
11210179 |
ttgtccaaacatacaaggtgtttaatgctaaaacacaccttcataaaagagggtgggtgtgttgtagcat |
11210248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 27261521 - 27261590
Alignment:
| Q |
135 |
ttgtcaaaacatacaaggtgttccatgccaaaaaacaccttcataaaagtgagagggtgtgttatagcat |
204 |
Q |
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||||| |||||||||||||||| |||| |||| ||||||||||||||| | | || |||||| |||||| |
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| T |
27261521 |
ttgtccaaacatacaaggtgtttaatgctaaaacacaccttcataaaagagggtggatgtgttgtagcat |
27261590 |
T |
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