View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7253_low_9 (Length: 326)

Name: NF7253_low_9
Description: NF7253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7253_low_9
NF7253_low_9
[»] chr5 (1 HSPs)
chr5 (20-316)||(881046-881343)


Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 881343 - 881046
Alignment:
Q  20 aaaccgccttgccaaattctatcaagaggtaaccactcatcacataacaacttatttgtctcaattaaaattcacatgtttggaattttt-attgtatga 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||    
T  881343 aaaccgccttgccaaattctatcaagaggtaaccactgatcacataacaacttgtttgtctcaatcaaaattcacatatttggaattttttattgtatga 881244  T
Q  119 ttttcagatatttggatttgaagaagtagaaagccccaagttcggagagtttaaggttgtatggctacgtgttccatcttcttccttatatcttcacctc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  881243 ttttcagatatttggatttgaagaagtagaaagccccaagttcggagagtttaaggttgtatggctacgtgttccatcttcttcattatatcttcacctc 881144  T
Q  219 atcgagcgcaacccatctaacaatctccctgaaggtccatggagtgccacctctcctgttaaagacccttcccatcttcctagaggccatcatctctg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  881143 atcgagcgcaacccatctaacaatctccctgaaggtccatggagtgccacctctcctgttaaagacccttcccatcttcctagaggccatcatctctg 881046  T

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