View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7254_high_1 (Length: 343)
Name: NF7254_high_1
Description: NF7254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7254_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 139 - 286
Target Start/End: Complemental strand, 11383845 - 11383698
Alignment:
| Q |
139 |
aagagctataatggttattttaatgttggtcaaaattggttatgatatgtactaaagtagtcaagtagnnnnnnncttggtaatcaactagttaaatatc |
238 |
Q |
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| T |
11383845 |
aagagctataatggttattttaatgttggtcaaaattggttatgatatgtggcaaagtagtcaagtagtgtttttcttggtaatcaactagttaaatatc |
11383746 |
T |
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| Q |
239 |
tcattgatccctgtattttttatcatattttagcattgattcttgcac |
286 |
Q |
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| T |
11383745 |
tcattggtccctgtatttcttatcatattttagcattgattcttgcac |
11383698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 11384244 - 11384110
Alignment:
| Q |
1 |
acacaagcctgctagtgatttcttctccatggttatggtttagtgatgaattataaatttaaggactcccttcactttgttaaatg--------tgtgat |
92 |
Q |
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| T |
11384244 |
acacaagcctggtagtgatttcttctccatggtt------tagtgatgaattataaatttaaggactcccttcactttgttaaatgtgtgtatgtgtgat |
11384151 |
T |
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| Q |
93 |
gaccttaagacacatatatatagccccaaggggcttagcca |
133 |
Q |
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| T |
11384150 |
gaccttaagacacatatatatagccccaaggggcttagcca |
11384110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 11381617 - 11381492
Alignment:
| Q |
3 |
acaagcctgctagtgatttcttctccatggttatggtttagtgatgaattataaattta-aggactcccttcactttgttaaatgtgtg-----atgacc |
96 |
Q |
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| T |
11381617 |
acaagcctgctagtgatttcttctccatggtt------tactgatgagttataaatttttatgactcccttcactttgttaaatgtgtgtatctgtgacc |
11381524 |
T |
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| Q |
97 |
ttaagacacatatatatagccccaaggggctt |
128 |
Q |
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| T |
11381523 |
ttaaaacacacatatatagccccaaggggctt |
11381492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 28021672 - 28021780
Alignment:
| Q |
9 |
ctgctagtgatttcttctccatggttatggtttagtgatgaattataaattta-aggactcccttcactttgttaaatgtg----tgatgaccttaagac |
103 |
Q |
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| T |
28021672 |
ctgctagtgatttcttctccatggtt------tagtgatgaactataaatttatatgactcccttcacttggttaaatgtgtgtgtgatgaccttaagac |
28021765 |
T |
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| Q |
104 |
acatatatatagccc |
118 |
Q |
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| T |
28021766 |
acatatatatagccc |
28021780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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