View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7254_high_3 (Length: 242)
Name: NF7254_high_3
Description: NF7254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7254_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11384411 - 11384632
Alignment:
| Q |
1 |
attggagcaaaggtttgtcaggttccatctcgtacattcacgggtgtatgcgtcccgctcgactttcctttttgtgactctgactgtaagaaaaaagagc |
100 |
Q |
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| T |
11384411 |
attggagcaaaggtttgtcaggttccatctcgtacattcacgggtgtatgcgtcccgctcgactttcctttttgtgactctgattgtaagaaaaaagagc |
11384510 |
T |
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| Q |
101 |
acgctatcaagggcaagtgcgtggccttcagttgttactgcattaaaggatgttaaattaaattcatccaaaaagactaaaatctatcaataaataacat |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11384511 |
acgcaatcaagggcaagtgcgtggccttcagttgttactgcattaaaggatgttaaattaaattcatcc-aaaagactaaaatctatcaataaataacat |
11384609 |
T |
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| Q |
201 |
gcagaatagctagcactgcatct |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
11384610 |
gcagaatagctagcactgcatct |
11384632 |
T |
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