View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7255_high_3 (Length: 418)
Name: NF7255_high_3
Description: NF7255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7255_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 216 - 349
Target Start/End: Original strand, 8858908 - 8859041
Alignment:
| Q |
216 |
tttacaatatttagtactagtggtccttgtacaccaccatcctacatatatagaaaatatttcttgaacacttaatatctattgatctataccttaagag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8858908 |
tttacaatatttagtactagtggtccttgtacaccaccatcctacatatatagaaaatatttcttgaacacttaatatctattgatctataccttaagag |
8859007 |
T |
|
| Q |
316 |
agaaaggaatagagagtatgatgttatatacagg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
8859008 |
agaaaggaatagagagtatgatgttatatacagg |
8859041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 55 - 219
Target Start/End: Original strand, 8858722 - 8858886
Alignment:
| Q |
55 |
tcatgagtcccattgtacaaatatgtttttatcttctctctgtttatctcaattgaaccaatcttcatatgcagcgaatctcttcatgatcttgatcgtg |
154 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8858722 |
tcatgagttccattgtacaaatatgtttttatcttctctctgtttatctcaattgaaccaatcttcatatgcagcgaatctcttcatgatcttgatcgtg |
8858821 |
T |
|
| Q |
155 |
tacaaaacagacacacattcttacatgcnnnnnnnnnnnntgattacaagcctccacaaacttta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8858822 |
tacaaaacagacacacattcttacatgcaaaaaagaaaaatgattacaagcctccacaaacttta |
8858886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 8858655 - 8858722
Alignment:
| Q |
13 |
cacttctccctactattttttggctatatccccactaagctttcatgagtcccattgtacaaatatgt |
80 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8858655 |
cacttctccctactatgttttggccatatccccactaagctttcatgagttccattgtacaaatatgt |
8858722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University