View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7255_high_7 (Length: 263)

Name: NF7255_high_7
Description: NF7255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7255_high_7
NF7255_high_7
[»] chr8 (10 HSPs)
chr8 (17-242)||(7839880-7840104)
chr8 (90-244)||(29668734-29668890)
chr8 (131-244)||(30735929-30736042)
chr8 (131-244)||(11676254-11676367)
chr8 (23-136)||(11676434-11676547)
chr8 (17-78)||(30735805-30735866)
chr8 (90-145)||(990210-990265)
chr8 (90-136)||(11668172-11668218)
chr8 (131-196)||(11668019-11668084)
chr8 (17-66)||(13958504-13958553)
[»] chr4 (8 HSPs)
chr4 (23-244)||(28071298-28071525)
chr4 (28-244)||(50063732-50063950)
chr4 (17-79)||(2035302-2035364)
chr4 (193-244)||(25536721-25536772)
chr4 (193-244)||(25516846-25516897)
chr4 (28-80)||(25516727-25516779)
chr4 (28-80)||(25536838-25536890)
chr4 (90-118)||(2035382-2035410)
[»] chr3 (12 HSPs)
chr3 (90-244)||(35127131-35127286)
chr3 (90-244)||(27221386-27221549)
chr3 (131-244)||(2544962-2545075)
chr3 (131-243)||(46278504-46278616)
chr3 (135-244)||(36429988-36430097)
chr3 (110-164)||(9291904-9291958)
chr3 (90-136)||(46278663-46278709)
chr3 (196-236)||(9291861-9291901)
chr3 (90-136)||(2545103-2545150)
chr3 (90-123)||(37921915-37921948)
chr3 (17-66)||(9291948-9291997)
chr3 (90-118)||(36430092-36430120)
[»] chr6 (7 HSPs)
chr6 (131-244)||(12626-12739)
chr6 (131-244)||(17661-17774)
chr6 (131-244)||(9900-10013)
chr6 (39-164)||(30641512-30641636)
chr6 (17-136)||(9755-9875)
chr6 (17-136)||(12481-12601)
chr6 (90-136)||(17589-17636)
[»] chr5 (5 HSPs)
chr5 (131-244)||(11015985-11016098)
chr5 (135-244)||(2643631-2643740)
chr5 (139-244)||(2315886-2315991)
chr5 (28-118)||(2643549-2643636)
chr5 (158-244)||(29836537-29836623)
[»] chr1 (7 HSPs)
chr1 (131-244)||(35754009-35754122)
chr1 (133-244)||(32060515-32060626)
chr1 (17-136)||(35754160-35754278)
chr1 (131-205)||(23552464-23552538)
chr1 (135-244)||(8081887-8081991)
chr1 (90-136)||(32060440-32060486)
chr1 (90-118)||(8081986-8082014)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 7839880 - 7840104
Alignment:
Q  17 aattggtttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgtgcnnnnnnnnnaatatgagattcgattccttttctcct 116  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||         ||||||||||||| |||||||||||||    
T  7839880 aattggtttgtgtaaaaaagataagattcagattccttcttctcctgttcttgtattcttgtgctttttttt-aatatgagattcgtttccttttctcct 7839978  T
Q  117 gttcaaatttctgaattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatc 216  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  7839979 gttcaaatttctgaattttcctgtgatttttgttctcgacctgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatc 7840078  T
Q  217 ccggtaccggtccgttttttgaaacc 242  Q
    ||||||||||||||||||||||||||    
T  7840079 ccggtaccggtccgttttttgaaacc 7840104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 90 - 244
Target Start/End: Complemental strand, 29668890 - 29668734
Alignment:
Q  90 aatatgagattcgattccttttctcctgttcaaa-tttctgaattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctg 188  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | |||||||    
T  29668890 aatatgagattcgattccttttctcctgttcaaaatttctgaattttcctgtgatttttgttctcggcgtgaaaaggtcgaaaaacggtcacggtggctg 29668791  T
Q  189 ctgataccgttttgtaacggccgcaatcccggtaccggtccgt-tttttgaaacctt 244  Q
    |||||||||||||||||||||| |||||||||||||||||| | |||||||||||||    
T  29668790 ctgataccgttttgtaacggccacaatcccggtaccggtccttatttttgaaacctt 29668734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 30735929 - 30736042
Alignment:
Q  131 attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  30735929 attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggcctcaatcccggcaccggtccg 30736028  T
Q  231 ttttttgaaacctt 244  Q
    ||||||||||||||    
T  30736029 ttttttgaaacctt 30736042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 11676367 - 11676254
Alignment:
Q  131 attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg 230  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||||||| | |||||||| ||||||| |||||||||||||||||||||||||||||| |    
T  11676367 attttgctgtgatttttgttctcaacgtgaaaaggaccaaaaacggtcacggtggctgccgataccgatttgtaacggccgcaatcccggtaccggtctg 11676268  T
Q  231 ttttttgaaacctt 244  Q
    ||||||||||||||    
T  11676267 ttttttgaaacctt 11676254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 11676547 - 11676434
Alignment:
Q  23 tttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgtgcnnnnnnnnnaatatgagattcgattccttttctcctgttcaa 122  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  11676547 tttgtgtaaaaaagataagattcagattccttcttctcctgttcttgtattcttgtgctttttttttaatatgagattcgattccttttctcctgttcaa 11676448  T
Q  123 atttctgaattttc 136  Q
    ||| ||||||||||    
T  11676447 attactgaattttc 11676434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 30735805 - 30735866
Alignment:
Q  17 aattggtttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgt 78  Q
    ||||| ||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||    
T  30735805 aattgatttgtgtaaaaaagataagattcagattccttcttctcctgttgttgtattcttgt 30735866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 990210 - 990265
Alignment:
Q  90 aatatgagattcgattccttttctcctgttcaaatttctgaattttcctgtgattt 145  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||    
T  990210 aatatgagattcgatttcttttctcctgttaaaatttatgaattttcctgtgattt 990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 11668218 - 11668172
Alignment:
Q  90 aatatgagattcgattccttttctcctgttcaaatttctgaattttc 136  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  11668218 aatatgagattcgattccttttctcctgttcaaattactgaattttc 11668172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 11668084 - 11668019
Alignment:
Q  131 attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgatacc 196  Q
    ||||| ||||| ||||||||||| ||||||||||| |||||||||||| | |||||||| ||||||    
T  11668084 attttgctgtggtttttgttctcaacgtgaaaaggaccaaaaacggtcacggtggctgccgatacc 11668019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 13958553 - 13958504
Alignment:
Q  17 aattggtttgtgtaaaaaagacaagatttagattccttcttctcctgttc 66  Q
    ||||| ||||||||||||||| |||||| ||||||||||||| |||||||    
T  13958553 aattgatttgtgtaaaaaagataagattcagattccttcttcccctgttc 13958504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 28071298 - 28071525
Alignment:
Q  23 tttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgtgcnnnnnnnnn------aatatgagattcgattccttttctcct 116  Q
    |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||    
T  28071298 tttgtgcaaaaaagataagattcagattccttcttctcctgttcttgtattcttgtgctttttttttttttttaatatgagattcgattccttttctcct 28071397  T
Q  117 gttcaaatttctgaattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  28071398 gttcaaatttctgaattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatc 28071497  T
Q  217 ccggtaccggtccgttttttgaaacctt 244  Q
    ||||||||||||||||||||||||||||    
T  28071498 ccggtaccggtccgttttttgaaacctt 28071525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 50063950 - 50063732
Alignment:
Q  28 gtaaaaaagacaagatttagattccttcttctcctgttcttgt-attcttgtgcnnnnnnnnnaatatgagattcgattccttttctcctgttcaaa-tt 125  Q
    |||||||||| |||||| ||||||||||||||||||||||||| |||| | |           |||||||||||||||||||||||||||||||||| ||    
T  50063950 gtaaaaaagataagattcagattccttcttctcctgttcttgtgattcctttttttaaatatgaatatgagattcgattccttttctcctgttcaaaatt 50063851  T
Q  126 tctgaattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccg 225  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||    
T  50063850 tctgaattttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtgacggtggctgctgataccgttttgtaacggccgcaatcccggtaccg 50063751  T
Q  226 gtccgttttttgaaacctt 244  Q
    |||| ||||||||||||||    
T  50063750 gtcctttttttgaaacctt 50063732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 2035302 - 2035364
Alignment:
Q  17 aattggtttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgtg 79  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  2035302 aattgatttgtgtaaaaaagataagattcagattccttcttctcctgttcttgtattcttgtg 2035364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 25536772 - 25536721
Alignment:
Q  193 taccgttttgtaacggccgcaatcccggtaccggtccgttttttgaaacctt 244  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25536772 taccgttttgtaacggccgcaatcccggtaccggtcctttttttgaaacctt 25536721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 25516846 - 25516897
Alignment:
Q  193 taccgttttgtaacggccgcaatcccggtaccggtccgttttttgaaacctt 244  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  25516846 taccgttttgtaacggccgcaatcccggtaccggtccttttttcgaaacctt 25516897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 25516727 - 25516779
Alignment:
Q  28 gtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgtgc 80  Q
    |||||||||| |||||| ||||||||||||||||||||||| |||||||||||    
T  25516727 gtaaaaaagataagattcagattccttcttctcctgttcttatattcttgtgc 25516779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 25536890 - 25536838
Alignment:
Q  28 gtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgtgc 80  Q
    |||||||||| |||||| ||||||||||||||||||||||| |||||||||||    
T  25536890 gtaaaaaagataagattcagattccttcttctcctgttcttatattcttgtgc 25536838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 118
Target Start/End: Original strand, 2035382 - 2035410
Alignment:
Q  90 aatatgagattcgattccttttctcctgt 118  Q
    |||||||||||||||||||||||||||||    
T  2035382 aatatgagattcgattccttttctcctgt 2035410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 90 - 244
Target Start/End: Original strand, 35127131 - 35127286
Alignment:
Q  90 aatatgagattcgattccttttctcctgttcaaa-tttctgaattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctg 188  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||    
T  35127131 aatatgagattcgattccttttctcctgttcaaaatttctgaattttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctg 35127230  T
Q  189 ctgataccgttttgtaacggccgcaatcccggtaccggtccgttttttgaaacctt 244  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35127231 ctgataccgttttgtaacggccgcaatcccggtaccggtcctttttttgaaacctt 35127286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 90 - 244
Target Start/End: Complemental strand, 27221549 - 27221386
Alignment:
Q  90 aatatgagattcgattccttttctcctgttcaaa-tttctgaattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctg 188  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||    
T  27221549 aatatgagattcgattccttttctcctgttcaaaatttctgaattttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctg 27221450  T
Q  189 ctg----ataccgttttgtaacggccgca----atcccggtaccggtccgttttttgaaacctt 244  Q
    |||     |||||||||||||||||||||    |||||||||||||||| ||||||||||||||    
T  27221449 ctgtactgtaccgttttgtaacggccgcaatccatcccggtaccggtcctttttttgaaacctt 27221386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 2545075 - 2544962
Alignment:
Q  131 attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg 230  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||     
T  2545075 attttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcct 2544976  T
Q  231 ttttttgaaacctt 244  Q
    ||||||||||||||    
T  2544975 ttttttgaaacctt 2544962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 46278616 - 46278504
Alignment:
Q  131 attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46278616 attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacgttggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg 46278517  T
Q  231 ttttttgaaacct 243  Q
    |||||| ||||||    
T  46278516 tttttttaaacct 46278504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 36430097 - 36429988
Alignment:
Q  135 tcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccgtttt 234  Q
    |||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36430097 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccttttt 36429998  T
Q  235 ttgaaacctt 244  Q
    ||||||||||    
T  36429997 ttgaaacctt 36429988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 9291958 - 9291904
Alignment:
Q  110 ttctcctgttcaaatttctgaattttcctgtgatttttgttctcgacgtgaaaag 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9291958 ttctcctgttcaaatttctgaattttcctgtgatttttgttctcgacgtgaaaag 9291904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 46278709 - 46278663
Alignment:
Q  90 aatatgagattcgattccttttctcctgttcaaatttctgaattttc 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  46278709 aatatgagattcgattccttttctcctgttcaaatttctgaattttc 46278663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 9291901 - 9291861
Alignment:
Q  196 cgttttgtaacggccgcaatcccggtaccggtccgtttttt 236  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9291901 cgttttgtaacggccgcaatcccggtaccggtccgtttttt 9291861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 2545150 - 2545103
Alignment:
Q  90 aatatgagattcgattccttttctcctgttc-aaatttctgaattttc 136  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2545150 aatatgagattcgattccttttctcctgttcaaaatttctgaattttc 2545103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 37921915 - 37921948
Alignment:
Q  90 aatatgagattcgattccttttctcctgttcaaa 123  Q
    ||||||||||||||||||||||||||||||||||    
T  37921915 aatatgagattcgattccttttctcctgttcaaa 37921948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 9291997 - 9291948
Alignment:
Q  17 aattggtttgtgtaaaaaagacaagatttagattccttcttctcctgttc 66  Q
    ||||| |||||||||||||||  ||||| ||||| |||||||||||||||    
T  9291997 aattgatttgtgtaaaaaagattagattcagatttcttcttctcctgttc 9291948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 118
Target Start/End: Complemental strand, 36430120 - 36430092
Alignment:
Q  90 aatatgagattcgattccttttctcctgt 118  Q
    |||||||||||||||||||||||||||||    
T  36430120 aatatgagattcgattccttttctcctgt 36430092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 12626 - 12739
Alignment:
Q  131 attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg 230  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||     
T  12626 attttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcaaggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcct 12725  T
Q  231 ttttttgaaacctt 244  Q
    ||||||||||||||    
T  12726 ttttttgaaacctt 12739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 17661 - 17774
Alignment:
Q  131 attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg 230  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||     
T  17661 attttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcaaggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcct 17760  T
Q  231 ttttttgaaacctt 244  Q
    ||||||||||||||    
T  17761 ttttttgaaacctt 17774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 9900 - 10013
Alignment:
Q  131 attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg 230  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||     
T  9900 attttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtaaaggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcct 9999  T
Q  231 ttttttgaaacctt 244  Q
    ||||||||||||||    
T  10000 ttttttgaaacctt 10013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 30641512 - 30641636
Alignment:
Q  39 aagatttagattccttcttctcctgttcttgtattcttgtgcnnnnnnnnnaatatgagattcgattccttttctcctgttcaaatttctgaattttcct 138  Q
    |||||| ||||||||||||| |||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30641512 aagattcagattccttcttcgcctgttcttgtattcttgtgctttttttt-aatatgagattcgattccttttctcctgttcaaatttctgaattttcct 30641610  T
Q  139 gtgatttttgttctcgacgtgaaaag 164  Q
    ||||||||||||||||||||||||||    
T  30641611 gtgatttttgttctcgacgtgaaaag 30641636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 9755 - 9875
Alignment:
Q  17 aattggtttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgtgcnnnnnnnnnaatatgagattcgattccttttctcct 116  Q
    ||||| ||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  9755 aattgatttgtgtaaaaaagataagattcatattccttcttctcctgttcttgtattcttgtgctttttttttaatatgagattcgattccttttctcct 9854  T
Q  117 gttc-aaatttctgaattttc 136  Q
    |||| ||||||||||||||||    
T  9855 gttcaaaatttctgaattttc 9875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 12481 - 12601
Alignment:
Q  17 aattggtttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgtgcnnnnnnnnnaatatgagattcgattccttttctcct 116  Q
    ||||| ||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  12481 aattgatttgtgtaaaaaagataagattcatattccttcttctcctgttcttgtattcttgtgctttttttttaatatgagattcgattccttttctcct 12580  T
Q  117 gttc-aaatttctgaattttc 136  Q
    |||| ||||||||||||||||    
T  12581 gttcaaaatttctgaattttc 12601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 17589 - 17636
Alignment:
Q  90 aatatgagattcgattccttttctcctgttc-aaatttctgaattttc 136  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17589 aatatgagattcgattccttttctcctgttcaaaatttctgaattttc 17636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 11016098 - 11015985
Alignment:
Q  131 attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  11016098 attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacggtggccgctgataccgttttgtaacgtccgcaattccggtaccggtccg 11015999  T
Q  231 ttttttgaaacctt 244  Q
    ||||||||||||||    
T  11015998 ttttttgaaacctt 11015985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 2643631 - 2643740
Alignment:
Q  135 tcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccgtttt 234  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2643631 tcctgtgatttttgttctcggcgtgaaaaggtacaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccttttt 2643730  T
Q  235 ttgaaacctt 244  Q
    ||||||||||    
T  2643731 ttgaaacctt 2643740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 2315886 - 2315991
Alignment:
Q  139 gtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccgttttttga 238  Q
    |||||||||||||||| |||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  2315886 gtgatttttgttctcggcgtgaaaaggtccaaaaacgatcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcctgtttttga 2315985  T
Q  239 aacctt 244  Q
    ||||||    
T  2315986 aacctt 2315991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 2643549 - 2643636
Alignment:
Q  28 gtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgtgcnnnnnnnnnaatatgagattcgattccttttctcctgt 118  Q
    |||||||||| |||||| ||||||||||| |||||||||||||||||||||||         ||||||||||||||||| |||||||||||    
T  2643549 gtaaaaaagataagattcagattccttctcctcctgttcttgtattcttgtgc---ttttttaatatgagattcgattcgttttctcctgt 2643636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 29836623 - 29836537
Alignment:
Q  158 tgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccgttttttgaaacctt 244  Q
    ||||||||| ||||||||||  | || |||||  ||||| |||||||||| ||| |||||||||||  ||||||||||| |||||||    
T  29836623 tgaaaaggtgcaaaaacggtaacggtagctgcctataccattttgtaacgtccgaaatcccggtacatgtccgttttttaaaacctt 29836537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 35754122 - 35754009
Alignment:
Q  131 attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg 230  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||     
T  35754122 attttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtacgggtcct 35754023  T
Q  231 ttttttgaaacctt 244  Q
    ||||||||||||||    
T  35754022 ttttttgaaacctt 35754009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 133 - 244
Target Start/End: Original strand, 32060515 - 32060626
Alignment:
Q  133 tttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccgtt 232  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  32060515 tttcctgtgatttttgttctcggcgtgaaaagatccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggcaccggtccttt 32060614  T
Q  233 ttttgaaacctt 244  Q
    ||||||||||||    
T  32060615 ttttgaaacctt 32060626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 35754278 - 35754160
Alignment:
Q  17 aattggtttgtgtaaaaaagacaagatttagattccttcttctcctgttcttgtattcttgtgcnnnnnnnnnaatatgagattcgattccttttctcct 116  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||         |||||||||||||||||||||||| ||    
T  35754278 aattgatttgtgtaaaaaagataagattcagattccttcttctcctgttcttatattcttgtgc-ttttttttaatatgagattcgattccttttcttct 35754180  T
Q  117 gttcaaatttctgaattttc 136  Q
    ||||||||||||||||||||    
T  35754179 gttcaaatttctgaattttc 35754160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 23552464 - 23552538
Alignment:
Q  131 attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaa 205  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  23552464 attttcctgtgatttttgttctcggcttgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaa 23552538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 8081991 - 8081887
Alignment:
Q  135 tcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc-gttt 233  Q
    |||||||||||||||||||| | |||||||||||||||||| || | ||||||||      |||||||||||||||| |||||||||||||||||  |||    
T  8081991 tcctgtgatttttgttctcggcatgaaaaggtccaaaaacgctcacggtggctgc------cgttttgtaacggccgtaatcccggtaccggtccttttt 8081898  T
Q  234 tttgaaacctt 244  Q
    |||||||||||    
T  8081897 tttgaaacctt 8081887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 32060440 - 32060486
Alignment:
Q  90 aatatgagattcgattccttttctcctgttcaaatttctgaattttc 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32060440 aatatgagattcgattccttttctcctgttcaaatttctgaattttc 32060486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 118
Target Start/End: Complemental strand, 8082014 - 8081986
Alignment:
Q  90 aatatgagattcgattccttttctcctgt 118  Q
    |||||||||||||||||||||||||||||    
T  8082014 aatatgagattcgattccttttctcctgt 8081986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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