View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7255_low_1 (Length: 589)
Name: NF7255_low_1
Description: NF7255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7255_low_1 |
 | |
|
| [»] scaffold0227 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Original strand, 28071371 - 28071943
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttcaaatttctgaattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
28071371 |
aatatgagattcgattccttttctcctgttcaaatttctgaattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacggtggctgc |
28071470 |
T |
|
| Q |
101 |
tgataccgttttgtaacggccgcaatcccggtaccggtccgttttttgaaacctt-------taaggctactttcttgttttatgtcagaagactattgt |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28071471 |
tgataccgttttgtaacggccgcaatcccggtaccggtccgttttttgaaaccttgaggatttaaggctactttcttgttttatgtcagaagactattgt |
28071570 |
T |
|
| Q |
194 |
tgtaatttaataaactataatcgtacgtaccttgtacattgctgtaagtatgctatgatatatctgtggcaataacattgatgtttgttgcaggtttatt |
293 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28071571 |
tgtaatt-aataaactataatcgtatgtaccttttacattgctgtaagtatgctctgatatatctgtggcaataacattgatgtttgttgcaggtttatt |
28071669 |
T |
|
| Q |
294 |
tgtttttccatttaatattagttaacaatatcttcttttgtttttagaggaaatcaagagtggtttgatggcgaacaatacttctaattctgattcccat |
393 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28071670 |
tgtttttccat--------agttaacaatatcttcttctgtttttagaggaaatcaagagtggtttgatggcgaacaatacttctaattctgattcccat |
28071761 |
T |
|
| Q |
394 |
cataaacgtcttggtcttttaaaagatcaagttcatttggttaaaaggaaagactctaatcgctatgtgatttcttcaatacaagatcaactatcatttg |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28071762 |
cataaacgtcttggtcttttaaaagatcaagttcatttggttaaaaggaaagactctaatcgctatgtgatttcttcaatacaagatcaactatcatttg |
28071861 |
T |
|
| Q |
494 |
agaaggggtttttcattgtgattcgtgcgtgccaactgttagcccaaaagaatgatggaataatattggttggggtggcggg |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28071862 |
agaaggggtttttcattgtgattcgtgcgtgccaactgttagcccaaaagaatgatggaataatattggttggggtggcggg |
28071943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 50063887 - 50063732
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttcaaa-tttctgaattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |
|
|
| T |
50063887 |
aatatgagattcgattccttttctcctgttcaaaatttctgaattttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtgacggtggctg |
50063788 |
T |
|
| Q |
100 |
ctgataccgttttgtaacggccgcaatcccggtaccggtccgttttttgaaacctt |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50063787 |
ctgataccgttttgtaacggccgcaatcccggtaccggtcctttttttgaaacctt |
50063732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 25536772 - 25536721
Alignment:
| Q |
104 |
taccgttttgtaacggccgcaatcccggtaccggtccgttttttgaaacctt |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25536772 |
taccgttttgtaacggccgcaatcccggtaccggtcctttttttgaaacctt |
25536721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 25516846 - 25516897
Alignment:
| Q |
104 |
taccgttttgtaacggccgcaatcccggtaccggtccgttttttgaaacctt |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
25516846 |
taccgttttgtaacggccgcaatcccggtaccggtccttttttcgaaacctt |
25516897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2035382 - 2035410
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2035382 |
aatatgagattcgattccttttctcctgt |
2035410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 155 - 575
Target Start/End: Complemental strand, 21516 - 21109
Alignment:
| Q |
155 |
ttaaggctactttcttgttttatgtcagaagactattgttgtaatttaataaactataatcgtacgtaccttgtacattgctgtaagtatgctatgatat |
254 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||||| | |
|
|
| T |
21516 |
ttaaggctactttcttgatttatggcagaagactattgttgtaatt-aataaactataatcatacttaccttttacattgctgtaagtatgctatgatgt |
21418 |
T |
|
| Q |
255 |
atctgtggcaataacattgatgtttgttgcaggtttatttgtttttccatttaatattagttaacaatatcttcttttgtttttagaggaaatcaagagt |
354 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| || |||||| ||||||| |||||| |
|
|
| T |
21417 |
atctgtggcaataacattgatgtt-gttgtaggtttatttgtttttccatttaatat---------atatcttctgtt-tttttaaaggaaattaagagt |
21329 |
T |
|
| Q |
355 |
ggtttgatggcgaacaatacttctaattctgattcccatcataaacgtcttggtcttttaaaagatcaagttcatttggttaaaaggaaagactctaatc |
454 |
Q |
| |
|
||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21328 |
tgttcgatggcgaacgatacttctagttctgattcccatcataaacgtcttggtcttttaaaagatcaagttcatttggttaaaaggaaa-actctaatc |
21230 |
T |
|
| Q |
455 |
gctatgtgatttcttcaatacaagatcaactatcatttgagaaggggtttttcattgtgattcgtgcgtgccaactgttagcccaaaagaatgatggaat |
554 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
21229 |
gctatgggatttcttcaatacaagatcaactatcattcgagaaggggtttttcattgtgattcgtgcatgccaattgttagcccaaaataatgatggaat |
21130 |
T |
|
| Q |
555 |
aatattggttggggtggcggg |
575 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21129 |
aatattggttggggtggcggg |
21109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 7839952 - 7840104
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttcaaatttctgaattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgc |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
7839952 |
aatatgagattcgtttccttttctcctgttcaaatttctgaattttcctgtgatttttgttctcgacctgaaaaggtccaaaaacggtcacggtggctgc |
7840051 |
T |
|
| Q |
101 |
tgataccgttttgtaacggccgcaatcccggtaccggtccgttttttgaaacc |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7840052 |
tgataccgttttgtaacggccgcaatcccggtaccggtccgttttttgaaacc |
7840104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 29668890 - 29668734
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttcaaa-tttctgaattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | ||||||| |
|
|
| T |
29668890 |
aatatgagattcgattccttttctcctgttcaaaatttctgaattttcctgtgatttttgttctcggcgtgaaaaggtcgaaaaacggtcacggtggctg |
29668791 |
T |
|
| Q |
100 |
ctgataccgttttgtaacggccgcaatcccggtaccggtccgt-tttttgaaacctt |
155 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| | ||||||||||||| |
|
|
| T |
29668790 |
ctgataccgttttgtaacggccacaatcccggtaccggtccttatttttgaaacctt |
29668734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 42 - 155
Target Start/End: Original strand, 30735929 - 30736042
Alignment:
| Q |
42 |
attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
30735929 |
attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggcctcaatcccggcaccggtccg |
30736028 |
T |
|
| Q |
142 |
ttttttgaaacctt |
155 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30736029 |
ttttttgaaacctt |
30736042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 11676367 - 11676254
Alignment:
| Q |
42 |
attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg |
141 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||||||| | |||||||| ||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
11676367 |
attttgctgtgatttttgttctcaacgtgaaaaggaccaaaaacggtcacggtggctgccgataccgatttgtaacggccgcaatcccggtaccggtctg |
11676268 |
T |
|
| Q |
142 |
ttttttgaaacctt |
155 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11676267 |
ttttttgaaacctt |
11676254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 990210 - 990265
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttcaaatttctgaattttcctgtgattt |
56 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
990210 |
aatatgagattcgatttcttttctcctgttaaaatttatgaattttcctgtgattt |
990265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11668218 - 11668172
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttcaaatttctgaattttc |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11668218 |
aatatgagattcgattccttttctcctgttcaaattactgaattttc |
11668172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11676480 - 11676434
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttcaaatttctgaattttc |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11676480 |
aatatgagattcgattccttttctcctgttcaaattactgaattttc |
11676434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 11668084 - 11668019
Alignment:
| Q |
42 |
attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgatacc |
107 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||| |||||||||||| | |||||||| |||||| |
|
|
| T |
11668084 |
attttgctgtggtttttgttctcaacgtgaaaaggaccaaaaacggtcacggtggctgccgatacc |
11668019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 497
Target Start/End: Original strand, 29534828 - 29534913
Alignment:
| Q |
412 |
ttaaaagatcaagttcatttggttaaaaggaaagactctaatcgctatgtgatttcttcaatacaagatcaactatcatttgagaa |
497 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| | ||||||| | ||||| |||| || | |||||||||||||||| |
|
|
| T |
29534828 |
ttaaaagatcaagttcgattggttaaaaggaaagactgcgaacgctatgaggtttctccaatccagaacaaactatcatttgagaa |
29534913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 3e-68; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 35127131 - 35127286
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttcaaa-tttctgaattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |
|
|
| T |
35127131 |
aatatgagattcgattccttttctcctgttcaaaatttctgaattttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctg |
35127230 |
T |
|
| Q |
100 |
ctgataccgttttgtaacggccgcaatcccggtaccggtccgttttttgaaacctt |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35127231 |
ctgataccgttttgtaacggccgcaatcccggtaccggtcctttttttgaaacctt |
35127286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 27221549 - 27221386
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttcaaa-tttctgaattttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |
|
|
| T |
27221549 |
aatatgagattcgattccttttctcctgttcaaaatttctgaattttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctg |
27221450 |
T |
|
| Q |
100 |
ctg----ataccgttttgtaacggccgca----atcccggtaccggtccgttttttgaaacctt |
155 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
27221449 |
ctgtactgtaccgttttgtaacggccgcaatccatcccggtaccggtcctttttttgaaacctt |
27221386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 2545075 - 2544962
Alignment:
| Q |
42 |
attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg |
141 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2545075 |
attttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcct |
2544976 |
T |
|
| Q |
142 |
ttttttgaaacctt |
155 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2544975 |
ttttttgaaacctt |
2544962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 46278616 - 46278504
Alignment:
| Q |
42 |
attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46278616 |
attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacgttggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg |
46278517 |
T |
|
| Q |
142 |
ttttttgaaacct |
154 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
46278516 |
tttttttaaacct |
46278504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 36430097 - 36429988
Alignment:
| Q |
46 |
tcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccgtttt |
145 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36430097 |
tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccttttt |
36429998 |
T |
|
| Q |
146 |
ttgaaacctt |
155 |
Q |
| |
|
|||||||||| |
|
|
| T |
36429997 |
ttgaaacctt |
36429988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 9291958 - 9291904
Alignment:
| Q |
21 |
ttctcctgttcaaatttctgaattttcctgtgatttttgttctcgacgtgaaaag |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9291958 |
ttctcctgttcaaatttctgaattttcctgtgatttttgttctcgacgtgaaaag |
9291904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46278709 - 46278663
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttcaaatttctgaattttc |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46278709 |
aatatgagattcgattccttttctcctgttcaaatttctgaattttc |
46278663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 9291901 - 9291861
Alignment:
| Q |
107 |
cgttttgtaacggccgcaatcccggtaccggtccgtttttt |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9291901 |
cgttttgtaacggccgcaatcccggtaccggtccgtttttt |
9291861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2545150 - 2545103
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttc-aaatttctgaattttc |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2545150 |
aatatgagattcgattccttttctcctgttcaaaatttctgaattttc |
2545103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37921915 - 37921948
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttcaaa |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
37921915 |
aatatgagattcgattccttttctcctgttcaaa |
37921948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 36430120 - 36430092
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36430120 |
aatatgagattcgattccttttctcctgt |
36430092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 42 - 155
Target Start/End: Original strand, 12626 - 12739
Alignment:
| Q |
42 |
attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg |
141 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12626 |
attttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcaaggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcct |
12725 |
T |
|
| Q |
142 |
ttttttgaaacctt |
155 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12726 |
ttttttgaaacctt |
12739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 42 - 155
Target Start/End: Original strand, 17661 - 17774
Alignment:
| Q |
42 |
attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg |
141 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17661 |
attttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcaaggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcct |
17760 |
T |
|
| Q |
142 |
ttttttgaaacctt |
155 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
17761 |
ttttttgaaacctt |
17774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 42 - 155
Target Start/End: Original strand, 9900 - 10013
Alignment:
| Q |
42 |
attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg |
141 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9900 |
attttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtaaaggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcct |
9999 |
T |
|
| Q |
142 |
ttttttgaaacctt |
155 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10000 |
ttttttgaaacctt |
10013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 30641562 - 30641636
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttcaaatttctgaattttcctgtgatttttgttctcgacgtgaaaag |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30641562 |
aatatgagattcgattccttttctcctgttcaaatttctgaattttcctgtgatttttgttctcgacgtgaaaag |
30641636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9828 - 9875
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttc-aaatttctgaattttc |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9828 |
aatatgagattcgattccttttctcctgttcaaaatttctgaattttc |
9875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12554 - 12601
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttc-aaatttctgaattttc |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12554 |
aatatgagattcgattccttttctcctgttcaaaatttctgaattttc |
12601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17589 - 17636
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttc-aaatttctgaattttc |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17589 |
aatatgagattcgattccttttctcctgttcaaaatttctgaattttc |
17636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 11016098 - 11015985
Alignment:
| Q |
42 |
attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
11016098 |
attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacggtggccgctgataccgttttgtaacgtccgcaattccggtaccggtccg |
11015999 |
T |
|
| Q |
142 |
ttttttgaaacctt |
155 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11015998 |
ttttttgaaacctt |
11015985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 46 - 155
Target Start/End: Original strand, 2643631 - 2643740
Alignment:
| Q |
46 |
tcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccgtttt |
145 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2643631 |
tcctgtgatttttgttctcggcgtgaaaaggtacaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccttttt |
2643730 |
T |
|
| Q |
146 |
ttgaaacctt |
155 |
Q |
| |
|
|||||||||| |
|
|
| T |
2643731 |
ttgaaacctt |
2643740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 50 - 155
Target Start/End: Original strand, 2315886 - 2315991
Alignment:
| Q |
50 |
gtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccgttttttga |
149 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2315886 |
gtgatttttgttctcggcgtgaaaaggtccaaaaacgatcacggtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcctgtttttga |
2315985 |
T |
|
| Q |
150 |
aacctt |
155 |
Q |
| |
|
|||||| |
|
|
| T |
2315986 |
aacctt |
2315991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 29836623 - 29836537
Alignment:
| Q |
69 |
tgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccgttttttgaaacctt |
155 |
Q |
| |
|
||||||||| |||||||||| | || ||||| ||||| |||||||||| ||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
29836623 |
tgaaaaggtgcaaaaacggtaacggtagctgcctataccattttgtaacgtccgaaatcccggtacatgtccgttttttaaaacctt |
29836537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 35754122 - 35754009
Alignment:
| Q |
42 |
attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccg |
141 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35754122 |
attttcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggtacgggtcct |
35754023 |
T |
|
| Q |
142 |
ttttttgaaacctt |
155 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35754022 |
ttttttgaaacctt |
35754009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 32060515 - 32060626
Alignment:
| Q |
44 |
tttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtccgtt |
143 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
32060515 |
tttcctgtgatttttgttctcggcgtgaaaagatccaaaaacggtcacggtggctgctgataccgttttgtaacggccgcaatcccggcaccggtccttt |
32060614 |
T |
|
| Q |
144 |
ttttgaaacctt |
155 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32060615 |
ttttgaaacctt |
32060626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 23552464 - 23552538
Alignment:
| Q |
42 |
attttcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaa |
116 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
23552464 |
attttcctgtgatttttgttctcggcttgaaaaggtccaaaaacggtcacggtggctgctgataccgttttgtaa |
23552538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 8081991 - 8081887
Alignment:
| Q |
46 |
tcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcgctgtggctgctgataccgttttgtaacggccgcaatcccggtaccggtcc-gttt |
144 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||| || | |||||||| |||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
8081991 |
tcctgtgatttttgttctcggcatgaaaaggtccaaaaacgctcacggtggctgc------cgttttgtaacggccgtaatcccggtaccggtccttttt |
8081898 |
T |
|
| Q |
145 |
tttgaaacctt |
155 |
Q |
| |
|
||||||||||| |
|
|
| T |
8081897 |
tttgaaacctt |
8081887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32060440 - 32060486
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttcaaatttctgaattttc |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32060440 |
aatatgagattcgattccttttctcctgttcaaatttctgaattttc |
32060486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35754206 - 35754160
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgttcaaatttctgaattttc |
47 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35754206 |
aatatgagattcgattccttttcttctgttcaaatttctgaattttc |
35754160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 8082014 - 8081986
Alignment:
| Q |
1 |
aatatgagattcgattccttttctcctgt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8082014 |
aatatgagattcgattccttttctcctgt |
8081986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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