View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7255_low_6 (Length: 312)
Name: NF7255_low_6
Description: NF7255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7255_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 4976973 - 4976691
Alignment:
| Q |
15 |
tgtgtgtaaaattaaagatggtttatgttttaggggacacggtgcacatgcaaacataaacagtgagaaaacgtgatacaagagaagggtacgtaatgga |
114 |
Q |
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| T |
4976973 |
tgtgtgtaaaattaaagatggtttatgtttcaggggacacggtgcacatgcaaacataaacagtgagaaaacgtgacacaagagaagggtacgtaatgga |
4976874 |
T |
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| Q |
115 |
tgatttcatcttacacgcaagatttatattatgagacaaatatccatttcnnnnnnngaggtgttaactcatattcaagagtaagatatgttgctgtcat |
214 |
Q |
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| T |
4976873 |
tgatttcatcttacacgcaagatttatattatgagacaaatatccatttcaaaaaaagaggtgttaactcatattcaagagtaagatatgttgctgtcat |
4976774 |
T |
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| Q |
215 |
gcttgcacttgtaagagtcacaagctgacgtctaaaacgatttcccaagaaattgatgtggcatgtgaagccattaagttttt |
297 |
Q |
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| T |
4976773 |
gcttgcacttgtaagagtcacaagctgacgtctaaaactatttcccaagaaattgatgtggcatgtgaagccattaagttttt |
4976691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 4994880 - 4994598
Alignment:
| Q |
15 |
tgtgtgtaaaattaaagatggtttatgttttaggggacacggtgcacatgcaaacataaacagtgagaaaacgtgatacaagagaagggtacgtaatgga |
114 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4994880 |
tgtgtgtaaaattaaagatggtttatgtttcaggggacacggtgcacatgcaaacataaacagtgagaaaacgtgacacaagagaagggtacgtaatgga |
4994781 |
T |
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| Q |
115 |
tgatttcatcttacacgcaagatttatattatgagacaaatatccatttcnnnnnnngaggtgttaactcatattcaagagtaagatatgttgctgtcat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4994780 |
tgatttcatcttacacgcaagatttatattatgagacaaatatccatttcaaaaaaagaggtgttaactcatattcaagagtaagatatgttgctgtcat |
4994681 |
T |
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| Q |
215 |
gcttgcacttgtaagagtcacaagctgacgtctaaaacgatttcccaagaaattgatgtggcatgtgaagccattaagttttt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4994680 |
gcttgcacttgtaagagtcacaagctgacgtctaaaactatttcccaagaaattgatgtggcatgtgaagccattaagttttt |
4994598 |
T |
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