View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7256_high_1 (Length: 815)
Name: NF7256_high_1
Description: NF7256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7256_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 744
Target Start/End: Complemental strand, 39385858 - 39385141
Alignment:
| Q |
18 |
caacaaagctctcttttcaaaatttgaaggtgtagctgcatttctttgatgttgaattcaaatcaaaacttctaattaagttagaacttagaagagatat |
117 |
Q |
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| T |
39385858 |
caacaaagctctcttttcaaaattttaaggtgtagctgcatttctttgatgttgaattcaaatcaaaacttccaattaagttagaa-------gagatat |
39385766 |
T |
|
| Q |
118 |
aaaccatctaatccgaaacttttgagttaaagaataaaaccacccacccacacacacagagtatattaaaatataactgatacaatagcttcatatttta |
217 |
Q |
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| T |
39385765 |
aaaccatctaatccgaaacttttgagttaaagaatataaccacccac------acacagagtatattaaaatataactgatacaatagcttcatatgtta |
39385672 |
T |
|
| Q |
218 |
aaagatgcaataaaaatccagcaaataaaatggaattgccacgctttttagtcgtgtgtgtctatnnnnnnnnnnnnttaaataaatgttgtttcattca |
317 |
Q |
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| T |
39385671 |
aaagatgcaataaaaatccagcaaataaaatggaattgccacgctttttagtcatgtgtgtctatacacac--------acttaaaggttatttcattca |
39385580 |
T |
|
| Q |
318 |
catttttctctaattggacttcatgttattgtcttcgcaaatgattgatggtagtagtannnnnnngtatgtaaccactaatttaattgaccatctttga |
417 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39385579 |
catttttctcgaattggacttcatgttattgtcttcgcaaatgattgatggtagtagtacttttttgtatgtaaccactaatttaattgaccatctttga |
39385480 |
T |
|
| Q |
418 |
taaactctctcctcttcttaaccatttcttcatatgtaatacacacaccccgttctgctattgcttgatgttgatataaataatgacaccaagcaagcat |
517 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39385479 |
taaactctctcctctt---aaccatttcttcatatgtaatacac----cccgttctgctattgcttgatgttgatataaataatgacaccaagcaagaat |
39385387 |
T |
|
| Q |
518 |
tgctgcattg--------------------tttgttccctttgaccaagaatattctctgtattgttttagtttattatagctattgatttgattcgtac |
597 |
Q |
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| T |
39385386 |
tgctgcattggcatcaaagttacaaatttatttgttccctttgaccaagaatattctctgtattgttttagtttattatagctattgatttgattcgtac |
39385287 |
T |
|
| Q |
598 |
taattaaattaataacatcattcatctcttgttttgtatggctggccacaactattgcaactgaagcagatttacacctgtcttctttatgtgctgccct |
697 |
Q |
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| T |
39385286 |
taattaaattaataacatcattcttctcttgttttg-atggctggccacaactattgcaactgaagcagatttacacctgtcttctttatgtgctgccct |
39385188 |
T |
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| Q |
698 |
gaaagagacctccactgcattaatcattagcacacggctaagccttc |
744 |
Q |
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| T |
39385187 |
gaaagagacctccactgcattaatcattagcacacggctaagccttc |
39385141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 750 - 804
Target Start/End: Complemental strand, 39384711 - 39384657
Alignment:
| Q |
750 |
ttttctatattaagcaatatccccattactagcactaattttattttcatttcag |
804 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39384711 |
ttttatatattaagcaatgtccccattactagcactaattttattttcatttcag |
39384657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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