View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7256_high_10 (Length: 325)
Name: NF7256_high_10
Description: NF7256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7256_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 564613 - 564318
Alignment:
| Q |
19 |
caaacttcctctttcaatgtctctaactatgccatctatcattgatgcattgaaaacaaaaacatcaaaactagttgctataatagctgattattttgcc |
118 |
Q |
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| T |
564613 |
caaacttcctctttcaatgtctctaactatgccatatatcattgatgcattgaaaacaaaaacatcaaaactagttgctataatagctgattattttgcc |
564514 |
T |
|
| Q |
119 |
tatgaagtgttctcatttgccaagaaactcaacattttatcatatacatattttccttcatcagccacagtgctatcactttgttttcattcaaaagttc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
564513 |
tatgaagtgttctcatttgccaagaaactcaacattttatcatatacatattttccttcatcagccacagtattatcactttgttttcattcaaaagttc |
564414 |
T |
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| Q |
219 |
tagatgaaacaatttctggtgagtttaaagacttgcaagaaccaatcaaaatcccaggttgtgtaccgattcaaggaaccgatcttccatcttcat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
564413 |
tagatgaaacaatttctggtgagtttaaagacttgcaagaaccaatcaaaatcccaggttgtgtaccgattcaaggaaccgatcttccatcttcat |
564318 |
T |
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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 274
Target Start/End: Complemental strand, 874093 - 874024
Alignment:
| Q |
205 |
tcattcaaaagttctagatgaaacaatttctggtgagtttaaagacttgcaagaaccaatcaaaatccca |
274 |
Q |
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||||| ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
874093 |
tcatttaaaagttctagataaaataatttctggtgaatttaaagacttgcaagaaccaatcataatccca |
874024 |
T |
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