View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7256_high_11 (Length: 309)
Name: NF7256_high_11
Description: NF7256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7256_high_11 |
 | |
|
| [»] scaffold0102 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 40 - 290
Target Start/End: Complemental strand, 17732640 - 17732390
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
17732640 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaag |
17732541 |
T |
|
| Q |
140 |
gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaat |
239 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17732540 |
ggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctcttcagaat |
17732441 |
T |
|
| Q |
240 |
caatcactttttaaccctcattcaaatggatttccttttttgagcagcgat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17732440 |
caatcactttttaaccctcattcaaatggatttcctttttggagcagcgat |
17732390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 40 - 290
Target Start/End: Original strand, 30709794 - 30710044
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| || ||||||||||||| |
|
|
| T |
30709794 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaacaag |
30709893 |
T |
|
| Q |
140 |
gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
30709894 |
gtttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcctcttcagaat |
30709993 |
T |
|
| Q |
240 |
caatcactttttaaccctcattcaaatggatttccttttttgagcagcgat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
30709994 |
caatcactttttaaccctcattcaaatggatttcttttttggagcagcgat |
30710044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 40 - 290
Target Start/End: Original strand, 15347726 - 15347976
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag |
139 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
15347726 |
tttgttaccttcttaaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaag |
15347825 |
T |
|
| Q |
140 |
gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaat |
239 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
15347826 |
ggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatattattgttccatcatcactcatgtctcctctttagaat |
15347925 |
T |
|
| Q |
240 |
caatcactttttaaccctcattcaaatggatttccttttttgagcagcgat |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
15347926 |
caatcactttttaaccctcattcaaatggatttccattttggagcagcgat |
15347976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 40 - 290
Target Start/End: Complemental strand, 6009253 - 6009009
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| || |||| |||||||||||||||| |
|
|
| T |
6009253 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataacagaaaagatcgtggacttgttggaaaaagaacaag |
6009154 |
T |
|
| Q |
140 |
gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaat |
239 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6009153 |
ggttatgatgaatagcatgaacaccaacatcaacatcaatgtttcttctcattctca------tattgttccatcatcactcatgtctcctcttcagaat |
6009060 |
T |
|
| Q |
240 |
caatcactttttaaccctcattcaaatggatttccttttttgagcagcgat |
290 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6009059 |
caatcacttttgaaccctcattcaaatggatttcctttttggagcagcgat |
6009009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 40 - 290
Target Start/End: Original strand, 27455221 - 27455471
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
27455221 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaag |
27455320 |
T |
|
| Q |
140 |
gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
27455321 |
gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcctcttcagaat |
27455420 |
T |
|
| Q |
240 |
caatcactttttaaccctcattcaaatggatttccttttttgagcagcgat |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27455421 |
aaatcactttttaaccctcattcaaatggatttcctttttggagcagcgat |
27455471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 78 - 290
Target Start/End: Complemental strand, 49681850 - 49681631
Alignment:
| Q |
78 |
gaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacaaca |
177 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49681850 |
gaattcatcaacaacataatgaataacataaaagatcatgaaattgttggaaaaagaacaacgtttatgatgaatagcatgaacaacaacatcaacaaca |
49681751 |
T |
|
| Q |
178 |
acggttcttctcattctcatgatgttattgttccatcatcact------catatc-tcctcttcagaatcaatcactttttaaccctcattcaaatggat |
270 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||| ||| || | |||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
49681750 |
acgattcttctcattctcatgatgttactgttccatcatcactgaatagcatgtcttaatctttagaatcaatcactttttaaccctcattcaaatgggt |
49681651 |
T |
|
| Q |
271 |
ttccttttttgagcagcgat |
290 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
49681650 |
ttcctttttggagcagcgat |
49681631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 40 - 290
Target Start/End: Complemental strand, 47445606 - 47445356
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
47445606 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaaaatcatgaacttgttggaaaaagaacaag |
47445507 |
T |
|
| Q |
140 |
gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaat |
239 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
47445506 |
gtttataatgaatagcatgaacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatcaccactcatgtctcctcttcagaat |
47445407 |
T |
|
| Q |
240 |
caatcactttttaaccctcattcaaatggatttccttttttgagcagcgat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
47445406 |
caatcactttttaaccctcattcaaatggatttcctttttggagcaacgat |
47445356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 40 - 290
Target Start/End: Original strand, 5348017 - 5348267
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
5348017 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaag |
5348116 |
T |
|
| Q |
140 |
gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaat |
239 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5348117 |
ggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctcttcagaat |
5348216 |
T |
|
| Q |
240 |
caatcactttttaaccctcattcaaatggatttccttttttgagcagcgat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5348217 |
caatcactttttaaccctcattcaaatggatttcctttttggagcagcgat |
5348267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 40 - 290
Target Start/End: Original strand, 36429583 - 36429833
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||| ||||||||||| || ||||||||||||| |
|
|
| T |
36429583 |
tttgttaccttcttgaattaatcaacaacaaccttttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaacaag |
36429682 |
T |
|
| Q |
140 |
gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaat |
239 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
36429683 |
gtttatgatgaatagcatggacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcctcttcagaat |
36429782 |
T |
|
| Q |
240 |
caatcactttttaaccctcattcaaatggatttccttttttgagcagcgat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
36429783 |
caatcactttttaaccctcattcaaatggatttcttttttggagcagcgat |
36429833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 90 - 290
Target Start/End: Original strand, 26380043 - 26380249
Alignment:
| Q |
90 |
aacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctc |
189 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| || || |||||| |||||||||| |
|
|
| T |
26380043 |
aacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacagcaacagcaacaatggttcttctc |
26380142 |
T |
|
| Q |
190 |
attctcatgatgttattgttccatcatcactcatatctcctcttcagaatcaatcactttttaacc------ctcattcaaatggatttccttttttgag |
283 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| |||||||||||||||| | ||||||| ||||||||||||| |||||||||| ||| |
|
|
| T |
26380143 |
attctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcaatctttaaccctcaggctcattcaaatgggtttcctttttggag |
26380242 |
T |
|
| Q |
284 |
cagcgat |
290 |
Q |
| |
|
||||||| |
|
|
| T |
26380243 |
cagcgat |
26380249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 40 - 290
Target Start/End: Complemental strand, 50838083 - 50837832
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
50838083 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaag |
50837984 |
T |
|
| Q |
140 |
gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaat |
239 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
50837983 |
ggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctcttcagaat |
50837884 |
T |
|
| Q |
240 |
caatcactttttaa-ccctcattcaaatggatttccttttttgagcagcgat |
290 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50837883 |
caatcactttttaacccctcattcaaatggatttcctttttggagcagcgat |
50837832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 40 - 290
Target Start/End: Original strand, 47470995 - 47471244
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
47470995 |
tttgttaccttcttgaattaatcaacaacaaccctttggaat-catcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaag |
47471093 |
T |
|
| Q |
140 |
gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaat |
239 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
47471094 |
gtttataatgaatagcatgaacaacaacatcaacatcaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcctcttcagaat |
47471193 |
T |
|
| Q |
240 |
caatcactttttaaccctcattcaaatggatttccttttttgagcagcgat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47471194 |
caatcactttttaaccctcattcaaatggatttcctttttggagcagcgat |
47471244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 40 - 290
Target Start/End: Original strand, 54560327 - 54560577
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag |
139 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
54560327 |
tttgttaccttcttgaattaatcaactacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaag |
54560426 |
T |
|
| Q |
140 |
gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaat |
239 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
54560427 |
ggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctcttcataat |
54560526 |
T |
|
| Q |
240 |
caatcactttttaaccctcattcaaatggatttccttttttgagcagcgat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54560527 |
caatcactttttaaccctcattcaaatggatttcctttttggagcagcgat |
54560577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 40 - 286
Target Start/End: Original strand, 32653 - 32899
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
32653 |
tttgttaccttcttgaattaatcaacaacaaccctttgaaattcatcaacaacagaatgaataatagaaaatatcatgaacttgttggaaaaagaacaag |
32752 |
T |
|
| Q |
140 |
gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| |
|
|
| T |
32753 |
gtttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctccttttcagaat |
32852 |
T |
|
| Q |
240 |
caatcactttttaaccctcattcaaatggatttccttttttgagcag |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32853 |
caatcactttttaaccctcattcaaatggatttcctttttggagcag |
32899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 40 - 290
Target Start/End: Original strand, 14790971 - 14791221
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag |
139 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
14790971 |
tttgttaccttcttcaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaatatcatgaacttgttggaaaaagaacaag |
14791070 |
T |
|
| Q |
140 |
gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaat |
239 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14791071 |
ggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctcttcagaat |
14791170 |
T |
|
| Q |
240 |
caatcactttttaaccctcattcaaatggatttccttttttgagcagcgat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14791171 |
caatcactttttaaccctcattcaaatggatttcctttttggagcagcgat |
14791221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 40 - 290
Target Start/End: Complemental strand, 20112111 - 20111860
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag |
139 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
20112111 |
tttgttaccttcttgaattaatcaacagcaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaag |
20112012 |
T |
|
| Q |
140 |
gttt-atgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaa |
238 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||| || |
|
|
| T |
20112011 |
gttttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcaaaa |
20111912 |
T |
|
| Q |
239 |
tcaatcactttttaaccctcattcaaatggatttccttttttgagcagcgat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
20111911 |
tcaatcactttttaaccctcattcaaatggattttctttttggagcagcgat |
20111860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 18308869 - 18308911
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaatt |
82 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
18308869 |
tttgttaccatcttgaattaatcaacaacaactctttggaatt |
18308911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 40 - 290
Target Start/End: Original strand, 36067616 - 36067866
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
36067616 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaag |
36067715 |
T |
|
| Q |
140 |
gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | |||||| ||||||||||| ||| |
|
|
| T |
36067716 |
gtttatgatgaatagcatgaacaacaacatcaacaataacggttcttctcattctcatgatgttactgttccatcgtaactcatgtctcctcttcaaaat |
36067815 |
T |
|
| Q |
240 |
caatcactttttaaccctcattcaaatggatttccttttttgagcagcgat |
290 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
36067816 |
caatcactttttaactctcattcaaatggatttcctttttggagcagcgat |
36067866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 54 - 290
Target Start/End: Original strand, 10256012 - 10256248
Alignment:
| Q |
54 |
gaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaaggtttatgatgaata |
153 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10256012 |
gaattcatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaata |
10256111 |
T |
|
| Q |
154 |
gcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaatcaatcactttttaa |
253 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||| ||| |
|
|
| T |
10256112 |
gcatgaacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcctcttgagaatcaatcactttctaa |
10256211 |
T |
|
| Q |
254 |
ccctcattcaaatggatttccttttttgagcagcgat |
290 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
10256212 |
ccctcattcaaatggatttccattttggagcagcgat |
10256248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 40 - 290
Target Start/End: Original strand, 4592919 - 4593163
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
4592919 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaag |
4593018 |
T |
|
| Q |
140 |
gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttattgttccatcatcactcatatctcctcttcagaat |
239 |
Q |
| |
|
| ||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
4593019 |
ggttatgatgaatagcatgaacaccaacat------caacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctcttcataat |
4593112 |
T |
|
| Q |
240 |
caatcactttttaaccctcattcaaatggatttccttttttgagcagcgat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
4593113 |
caatcactttttaaccctcattcaaatgaatttcctttttggagcagcgat |
4593163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 10255974 - 10256027
Alignment:
| Q |
40 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaaca |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255974 |
tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaaca |
10256027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University