View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7256_high_7 (Length: 357)
Name: NF7256_high_7
Description: NF7256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7256_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 27 - 339
Target Start/End: Complemental strand, 9388858 - 9388546
Alignment:
| Q |
27 |
tttacatggaatgtaaacattagatatacacacaaaaagttccaaacaatagcaaattgatatactacactcaacttctgataccctcccctgtgaaaca |
126 |
Q |
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| T |
9388858 |
tttacatggaatgtaaacattagatatacacacaaaaagttccaaacaatagcaaattgatatactacactcaacttctgataccctcctctgtgaaaca |
9388759 |
T |
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| Q |
127 |
aacaaggcaacataacatcataatttcaaattgcgtttgattccatatgcatgcaaaatgaaattgaggctcttgaaaataatgacacataagacatact |
226 |
Q |
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| T |
9388758 |
aacaaggcaacataacatcataatttcaaattgcgtttgattcgatatgcatgcaaaatgaaattgaggctcttgaaaataatgacacataagacatact |
9388659 |
T |
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| Q |
227 |
acaacaagatttgaagaaatcatggacctagctagtatatggattaatttagctagtttccagatattttggtcttaatagaaaggaatcgtactataac |
326 |
Q |
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| T |
9388658 |
acaacaagaattgaagaaatcatggacctagctagtacatggattaatttagctagtttccagatattttggtcttgatagaaaggaatcatactataac |
9388559 |
T |
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| Q |
327 |
ttcatgtcaattt |
339 |
Q |
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| T |
9388558 |
ttcatgtcaattt |
9388546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 9388904 - 9388862
Alignment:
| Q |
132 |
ggcaacataacatcataattt-caaattgcgtttgattccata |
173 |
Q |
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| T |
9388904 |
ggcaacataacatcataatttccaaattgcgtttgattccata |
9388862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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