View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7256_low_13 (Length: 255)
Name: NF7256_low_13
Description: NF7256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7256_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 54396811 - 54397039
Alignment:
| Q |
16 |
caagaaaagcttcagcaacttctctcatcttgatcaacaccattgaagaaatttcctctgctgcaaatttcttctcttcacctttgtaattaacaacgat |
115 |
Q |
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| T |
54396811 |
caagaaaagcttcagcaacttctctcatcttgatcaacaccattgaagaaatttcctctgctgcaaatttcttctcttcacctttgtaattaacaacgat |
54396910 |
T |
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| Q |
116 |
cataggtttttcagcgggacctggaacgactttaaacggccatagtttcatgtcgttttgaactgattcatcggagaatctacgaccaattaaacgctta |
215 |
Q |
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| T |
54396911 |
cataggtttttcagcgggacctggaacgactttaaacggccatagtttcatgtcgttttgaactgattcatcggagaatctacgaccaattaaacgctta |
54397010 |
T |
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| Q |
216 |
gcatcgaagacggtgttctgtgggttcat |
244 |
Q |
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| T |
54397011 |
gcatcgaagacggtgttctgtggattcat |
54397039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 220
Target Start/End: Complemental strand, 23587449 - 23587309
Alignment:
| Q |
80 |
aaatttcttctcttcacctttgtaattaacaacgatcataggtttttcagcgggacctggaacgactttaaacggccatagtttcatgtcgttttgaact |
179 |
Q |
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| T |
23587449 |
aaattgcttctcttccgctttgtagttcaccacgatcattggtttgtcagcagggccaggaatgaccttgaacggccacaatttcatgtcgctctgtact |
23587350 |
T |
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| Q |
180 |
gattcatcggagaatctacgaccaattaaacgcttagcatc |
220 |
Q |
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| T |
23587349 |
gaaacatcgccaaatcgcctaccaattaatcgcttagcatc |
23587309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 17703654 - 17703613
Alignment:
| Q |
191 |
gaatctacgaccaattaaacgcttagcatcgaagacggtgtt |
232 |
Q |
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| T |
17703654 |
gaatctacgaccaatcaacctcttagcatcgaagacggtgtt |
17703613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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