View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7256_low_2 (Length: 717)

Name: NF7256_low_2
Description: NF7256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7256_low_2
NF7256_low_2
[»] chr4 (6 HSPs)
chr4 (81-699)||(40114887-40115505)
chr4 (206-335)||(9006838-9006967)
chr4 (245-440)||(42360619-42360811)
chr4 (573-662)||(9007211-9007300)
chr4 (559-631)||(42360930-42361002)
chr4 (19-52)||(40114825-40114858)
[»] chr1 (1 HSPs)
chr1 (81-397)||(656021-656335)
[»] chr5 (3 HSPs)
chr5 (86-440)||(3017389-3017740)
chr5 (559-631)||(3017198-3017270)
chr5 (207-345)||(23971201-23971339)
[»] chr6 (2 HSPs)
chr6 (207-345)||(18187960-18188098)
chr6 (554-632)||(3703285-3703363)
[»] chr2 (1 HSPs)
chr2 (597-632)||(9038424-9038459)


Alignment Details
Target: chr4 (Bit Score: 578; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 81 - 699
Target Start/End: Original strand, 40114887 - 40115505
Alignment:
Q  81 atataccattggaggacaaataagattttagttttatgaattctcctccattatctgagtaaagggaagtaatagggaagttaaaatgtttctcaacaac 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40114887 atataccattggaggacaaataagattttagttttatgaattctcctccattatctgagtaaagggaagtaatagagaagttaaaatgtttctcaacaac 40114986  T
Q  181 atttttaaattgaggaaatatagtggagacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtat 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40114987 atttttaaattgaggaaatatagtggagacatcagatttatttttcatgggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtat 40115086  T
Q  281 aagaaaccatctaaggacctaacaggggctggtccccatacatcagagtaaataatctcaagaggcctagagctggtaatacttgaaatagtgaatggaa 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40115087 aagaaaccatctaaggacctaacaggggctggtccccatacatcagagtaaataatctcaagaggcctagagctggtaatacttgaaatagtgaatggca 40115186  T
Q  381 gcttatgactttttgaggtattacaagcgatgcatggtgtgttgagactatgttttatttgcagaagggaaaatagatgtctcatggtgcgattacacgg 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40115187 gcttatgactttttgaggtattacaagcgatgcatggtgtgttgagactatgttttatttgcagaagggaaaatagatgtctcatggtgcgattacacgg 40115286  T
Q  481 atgtcctaaaatatgatgccaaggtggattagtggcgagtgaagttatgaagctggtggtgggtggctttggaatgtggtagagaccatccttatgcaat 580  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40115287 atgtcctaaaatatgatgccaaggtggagtagtggcgagtgaagttatgaagctggtggtgggtggctttggaatgtggtagagaccatccttatgcaat 40115386  T
Q  581 ccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttttgcataaatgtgagacag 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||    
T  40115387 ccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagaaaaaaattcaatggatatagggttagttttgcataaatgtgagacag 40115486  T
Q  681 acaataacttgcaagtgat 699  Q
    |||||||||||||||||||    
T  40115487 acaataacttgcaagtgat 40115505  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 206 - 335
Target Start/End: Original strand, 9006838 - 9006967
Alignment:
Q  206 gagacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtataagaaaccatctaaggacctaacag 305  Q
    ||||||||||||||||||||||| ||| | | || ||||||||| ||||||||||| ||||||||||  || |||||| | |||||||||||||||| ||    
T  9006838 gagacatcagatttatttttcattggatataacccaatatatttggagaaatgatctacaaatattaagtaatataagtagccatctaaggacctaatag 9006937  T
Q  306 gggctggtccccatacatcagagtaaataa 335  Q
    | || || ||||||||||||  ||||||||    
T  9006938 gagcagggccccatacatcactgtaaataa 9006967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 245 - 440
Target Start/End: Original strand, 42360619 - 42360811
Alignment:
Q  245 tattttgagaaatgatcaacaaatattagatagtataagaaaccatctaaggacctaacaggggctggtccccatacatcagagtaaataatctcaagag 344  Q
    ||||||||  ||||||| ||||| ||||||||||| ||| | |||||||| |||||||  || |||   ||||||||||| || |||||| ||| |||||    
T  42360619 tattttgaataatgatcgacaaagattagatagtacaagtagccatctaacgacctaatgggagct---ccccatacatccgaataaatattcttaagag 42360715  T
Q  345 gcctagagctggtaatacttgaaatagtgaatgga-agcttatgactttttgaggtattacaagcgatgcatggtgtgttgagactatgttttattt 440  Q
    | |||| |||    ||||| |||  ||| |||||| |  ||||||||||||||||||||||||| ||||||||| ||||||| ||  ||||||||||    
T  42360716 gtctagtgctctctatactagaagaagt-aatggacaatttatgactttttgaggtattacaagagatgcatggagtgttgataccgtgttttattt 42360811  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 573 - 662
Target Start/End: Original strand, 9007211 - 9007300
Alignment:
Q  573 tatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttt 662  Q
    |||||| |||||| || ||||||||| |||||||||||||||||||||||||| ||||||       ||||||||| ||| |||||||||    
T  9007211 tatgcagtcctttgaggagaggctcctttgtcttcaaatccttcaccaaaaaacaatcagaaaaaaattcaatggaaatagggttagttt 9007300  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 631
Target Start/End: Original strand, 42360930 - 42361002
Alignment:
Q  559 gtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatca 631  Q
    |||||| ||||||||||||| |||||||| ||||||  ||||||||||||| ||||| |||||  ||||||||    
T  42360930 gtagagcccatccttatgcattccttttataagaggagcccttgtcttcaagtcctttaccaagtaataatca 42361002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 40114825 - 40114858
Alignment:
Q  19 tctatgtcttcgttcggcagaggaatttagttca 52  Q
    ||||||||||||||||||||||||||||||||||    
T  40114825 tctatgtcttcgttcggcagaggaatttagttca 40114858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 81 - 397
Target Start/End: Original strand, 656021 - 656335
Alignment:
Q  81 atataccattggaggacaaataagattttagttttatgaattctcctccattatctgagtaaagggaagtaatagggaagttaaaatgtttctcaacaac 180  Q
    |||||||||| ||||| | ||| ||||||||||| ||| |||| || ||||| || || || || ||| | ||||| || ||||||| ||| | ||||||    
T  656021 atataccattagaggagagataggattttagtttgatgtattccccaccattgtcagaatatagagaaatgataggcaaattaaaatattttttaacaac 656120  T
Q  181 atttttaaattgaggaaatatagtggagacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtat 280  Q
    | |||| |||| |||||| ||| | |||||||| |||||||||||||  ||| | | ||||||||||||  | |||||||||||||| ||||||||||||    
T  656121 acttttgaatttaggaaaaataatagagacatctgatttatttttcaatggatataaccaaatatatttcaaaaaatgatcaacaaaaattagatagtat 656220  T
Q  281 aagaaaccatctaaggacctaacaggggctggtccccatacatcagagtaaataatctcaagaggcctagagctggtaatacttgaaatagtgaatggaa 380  Q
    ||| |||||||||| ||||||| ||| |||||  |||||||||| ||||||||||||||||| ||||||| |||  |||||||||| |||||||| || |    
T  656221 aagtaaccatctaatgacctaataggagctgg--cccatacatctgagtaaataatctcaagcggcctagtgctcttaatacttgatatagtgaacggca 656318  T
Q  381 gcttatgactttttgag 397  Q
     | ||||||||||||||    
T  656319 acctatgactttttgag 656335  T

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Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 86 - 440
Target Start/End: Complemental strand, 3017740 - 3017389
Alignment:
Q  86 ccattggaggacaaataagattttagttttatgaattctcctccattatctgagtaaagggaagtaatagggaagttaaaatgtttctcaacaacatttt 185  Q
    ||||| || |||||| ||||| ||||||| ||| | ||||| ||||| || || || || |||  ||| || |||||||||| ||| |||||||  | ||    
T  3017740 ccatttgatgacaaaaaagatcttagtttaatgtactctccaccattgtcagaatatagagaaacaattggtaagttaaaatatttttcaacaagttatt 3017641  T
Q  186 taaattgaggaaatatagtggagacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtataagaa 285  Q
    | ||||||||||| |  |  ||||||||||| || |||||||| ||| | | |||  | ||||||||  ||||||||||||| ||||||||||| ||| |    
T  3017640 tgaattgaggaaaaagtgatgagacatcagacttgtttttcatgggatataaccatttgtattttgaataatgatcaacaaagattagatagtacaagta 3017541  T
Q  286 accatctaaggacctaacaggggctggtccccatacatcagagtaaataatctcaagaggcctagagctggtaatacttgaaatagtgaatggaagctta 385  Q
     |||||||| |||||||  || || |||||||||||||| || |||||| ||||||||||||||| |||    ||||| ||   ||| || || |  |||    
T  3017540 gccatctaacgacctaatgggagcaggtccccatacatccgaataaatattctcaagaggcctagtgctctctatactaga---agtaaagggcaattta 3017444  T
Q  386 tgactttttgaggtattacaagcgatgcatggtgtgttgagactatgttttattt 440  Q
    |||||||||||||||||||||| |||||||||  |||||| ||  ||||||||||    
T  3017443 tgactttttgaggtattacaagagatgcatggattgttgataccgtgttttattt 3017389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 559 - 631
Target Start/End: Complemental strand, 3017270 - 3017198
Alignment:
Q  559 gtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatca 631  Q
    |||||| |||||||||||||||||||||||||||||  ||||||||||||| ||||| |||||  ||||||||    
T  3017270 gtagagcccatccttatgcaatccttttagaagaggagcccttgtcttcaagtcctttaccaagtaataatca 3017198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 207 - 345
Target Start/End: Original strand, 23971201 - 23971339
Alignment:
Q  207 agacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtataagaaaccatctaaggacctaacagg 306  Q
    |||||||||| |||  |||||| ||| |||||||||| ||||| || |||||||||| ||| |||| ||| || | |||||||||||| ||||||| |||    
T  23971201 agacatcagacttaaatttcattggataaagccaaatgtatttggaaaaatgatcaataaaaattacataataaacgaaaccatctaaagacctaatagg 23971300  T
Q  307 ggctggtccccatacatcagagtaaataatctcaagagg 345  Q
     |  || ||||| ||||| || ||||| | |||||||||    
T  23971301 agtagggccccagacatccgaataaatcaactcaagagg 23971339  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 207 - 345
Target Start/End: Original strand, 18187960 - 18188098
Alignment:
Q  207 agacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtataagaaaccatctaaggacctaacagg 306  Q
    |||||||||| |||  |||||| ||| |||||||||| ||||| ||||||||||||| ||| |||| ||| || | |||||||||||| ||||||| |||    
T  18187960 agacatcagacttaaatttcattggataaagccaaatgtatttggagaaatgatcaataaaaattacataataaacgaaaccatctaaagacctaatagg 18188059  T
Q  307 ggctggtccccatacatcagagtaaataatctcaagagg 345  Q
     || || ||| | ||||| || ||||| | |||||||||    
T  18188060 agcagggccctagacatccgaataaatcaactcaagagg 18188098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 632
Target Start/End: Original strand, 3703285 - 3703363
Alignment:
Q  554 atgtggtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcag 632  Q
    ||||||||||| ||||  ||||||  |||| ||||||  ||| ||||||||||||||||||| | ||||||| ||||||    
T  3703285 atgtggtagagtccattgttatgccgtcctcttagaatgggcacccttgtcttcaaatccttaatcaaaaaacaatcag 3703363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 632
Target Start/End: Original strand, 9038424 - 9038459
Alignment:
Q  597 cccttgtcttcaaatccttcaccaaaaaataatcag 632  Q
    ||||||||||||||||||||||||||||| ||||||    
T  9038424 cccttgtcttcaaatccttcaccaaaaaaaaatcag 9038459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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