View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7256_low_5 (Length: 474)

Name: NF7256_low_5
Description: NF7256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7256_low_5
NF7256_low_5
[»] chr4 (9 HSPs)
chr4 (19-387)||(47292305-47292673)
chr4 (109-330)||(56209616-56209838)
chr4 (395-468)||(47291918-47291991)
chr4 (185-327)||(45863436-45863579)
chr4 (185-318)||(45883384-45883518)
chr4 (115-224)||(54303383-54303492)
chr4 (403-462)||(47288412-47288472)
chr4 (115-148)||(45863240-45863273)
chr4 (115-148)||(45882639-45882672)
[»] chr8 (1 HSPs)
chr8 (110-325)||(7973526-7973742)
[»] chr5 (2 HSPs)
chr5 (155-330)||(10520217-10520393)
chr5 (274-337)||(35803584-35803647)
[»] chr2 (1 HSPs)
chr2 (185-329)||(24348395-24348540)


Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 47292673 - 47292305
Alignment:
Q  19 ccttttatattcaccaagtgctacaacttctggaattacagaattgagaccacctttaaacaaggaaacaggatcagcttcaggagacgtataaacttct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47292673 ccttttatattcaccaagtgctacaacttctggaattacagaattgagaccacctttaaataaggaaacaggatcagcttcaggagacgtataaacttct 47292574  T
Q  119 tcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47292573 tcacatgcacaagcaatgtaatattcttttcctcctattgcagggacataagcaacaataagttttcctgattttctgaaattcatgatttcctttcgaa 47292474  T
Q  219 tttcatgagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaatt 318  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292473 tttcatgagtttagcccaaccacaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaatt 47292374  T
Q  319 cgaggcagagatgatacctcaccatggtgctcaggtatctggccgctcaaatcaatttgcaagacgctg 387  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47292373 cgaggcagagatgatacctcaccatggtgctcagatatctggccgctcaaatcaatttgcaagacgctg 47292305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 109 - 330
Target Start/End: Original strand, 56209616 - 56209838
Alignment:
Q  109 ataaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatt 208  Q
    ||||| |||||||||| ||||||||||||||||||||||  |||| |||| || ||||||||| |||| |||||| || |||||||||||||| | ||||    
T  56209616 ataaatttcttcacatacacaagcaatgtaatattctttaactccaattgaagtaacataagccacaacaagtttaccagattttctgaaatttaagatt 56209715  T
Q  209 tcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaat 307  Q
    | |||||||||||||| ||||||||||||||| |||||||||  || |||| ||||| | || |||||||||||||||||||| || |||||||||| ||    
T  56209716 tgccttcgaatttcatcgagtttagcccaaccacaatttaaagtatcaatacgaagatatacggcagaaatacgatgatcataagctgctttcaacatat 56209815  T
Q  308 tatcgcaaattcgaggcagagat 330  Q
    ||||||||| | |||||||||||    
T  56209816 tatcgcaaaattgaggcagagat 56209838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 395 - 468
Target Start/End: Complemental strand, 47291991 - 47291918
Alignment:
Q  395 gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggtttcttctcac 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47291991 gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggtttcttctcac 47291918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 185 - 327
Target Start/End: Original strand, 45863436 - 45863579
Alignment:
Q  185 cctgattttctgaaattcatgatttcccttcgaatttcatgag-tttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat 283  Q
    ||||||||||||||||||| |||||  ||||||||||||| || |||||||||||| |||||||||  || ||| |||||| | || ||||||||||||     
T  45863436 cctgattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgag 45863535  T
Q  284 gatcatatgcggctttcaacaaattatcgcaaattcgaggcaga 327  Q
    ||||||| || ||||||||||||||||| |||||| | ||||||    
T  45863536 gatcataagctgctttcaacaaattatctcaaatttggggcaga 45863579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 185 - 318
Target Start/End: Original strand, 45883384 - 45883518
Alignment:
Q  185 cctgattttctgaaattcatgatttcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat 283  Q
    ||||||||||||||||| | ||| |  ||||||||||||| |||||||||||||||||||||||||   | ||| |||||| ||||  |||||||||||     
T  45883384 cctgattttctgaaatttaagatctgtcttcgaatttcatcgagtttagcccaaccgcaatttaaattgtcaatttgaagatacacaccagaaatacgag 45883483  T
Q  284 gatcatatgcggctttcaacaaattatcgcaaatt 318  Q
    ||||||| || ||||||||||||||||||||||||    
T  45883484 gatcataagctgctttcaacaaattatcgcaaatt 45883518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 54303492 - 54303383
Alignment:
Q  115 ttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttccctt 214  Q
    ||||| |||||||| ||| | |||||| |||||| |||| ||| |||| ||||||||||  |||||||||||||||||||||||||| | ||||| ||||    
T  54303492 ttctttacatgcactagcgacgtaatactcttttactccaatttcagggacataagcaaagataagttttcctgattttctgaaatttaagatttgcctt 54303393  T
Q  215 cgaatttcat 224  Q
    ||||||||||    
T  54303392 cgaatttcat 54303383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 403 - 462
Target Start/End: Complemental strand, 47288472 - 47288412
Alignment:
Q  403 tcagtcgattagggctt-ggaaaggaaaagaatagtgtatgagcgttagcttagggtttct 462  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||||    
T  47288472 tcagtcgattagggctttggaaaggaaaagaatagtgcatgagcgtgagcttagggcttct 47288412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 45863240 - 45863273
Alignment:
Q  115 ttcttcacatgcacaagcaatgtaatattctttt 148  Q
    ||||||||||||||||||||||||||||| ||||    
T  45863240 ttcttcacatgcacaagcaatgtaatattatttt 45863273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 45882639 - 45882672
Alignment:
Q  115 ttcttcacatgcacaagcaatgtaatattctttt 148  Q
    |||||||||||| |||||||||||||||||||||    
T  45882639 ttcttcacatgcgcaagcaatgtaatattctttt 45882672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 110 - 325
Target Start/End: Original strand, 7973526 - 7973742
Alignment:
Q  110 taaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgattt 209  Q
    ||||||||||||||||||||| | ||||||||||||||||| || ||| |||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  7973526 taaacttcttcacatgcacaacctatgtaatattcttttccacccattacagcgacataagcaacaataagtttacctgattttctgaaatttatgattt 7973625  T
Q  210 cccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaatt 308  Q
    ||||| ||||||||| ||||||||| |||| ||| |||||| ||||||||  || | |||| |||||||||||| ||||||| |||||||||||||||||    
T  7973626 ccctttgaatttcatcgagtttagctcaactgcattttaaaggataaataacaacatacacagcagaaatacgaggatcataagcggctttcaacaaatt 7973725  T
Q  309 atcgcaaattcgaggca 325  Q
     ||||||||| ||||||    
T  7973726 ctcgcaaatttgaggca 7973742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 155 - 330
Target Start/End: Complemental strand, 10520393 - 10520217
Alignment:
Q  155 attgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaatttcatga-gtttagcccaaccgcaatttaaacgat 253  Q
    |||| ||| |||||||| ||||  | ||| || |||||||||||||| |  |||| |||| |||| |||| | ||||||||||||| ||| ||||| | |    
T  10520393 attgaagggacataagccacaaccattttccccgattttctgaaatttaaaatttgcctttgaatctcatcaagtttagcccaaccccaacttaaatggt 10520294  T
Q  254 aaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagat 330  Q
      ||||||||| | || || ||||||| | |||||||||| |||||||| |||||| |||||||| |||| ||||||    
T  10520293 cgatatgaagataaacagcggaaatacaaggatcatatgctgctttcaagaaattaccgcaaatttgaggaagagat 10520217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 35803584 - 35803647
Alignment:
Q  274 gaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacct 337  Q
    ||||||||| ||||||| ||||||||||| |||| ||||||||||  |||||||||| ||||||    
T  35803584 gaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagataatacct 35803647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 329
Target Start/End: Complemental strand, 24348540 - 24348395
Alignment:
Q  185 cctgattttctgaaattcatgatttcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat 283  Q
    ||||||||| ||||||||| ||| | |||||||||||| |  | |||| |||| || |||| ||||| || |||||| ||| | ||  ||||||| |||     
T  24348540 cctgattttttgaaattcaagatgtgccttcgaatttcttctactttaccccacccacaatctaaactatcaatatggagatagaccccagaaattcgag 24348441  T
Q  284 gatcatatgcggctttcaacaaattatcgcaaattcgaggcagaga 329  Q
    ||||||| || |||||||| ||||| ||||| ||| |||| |||||    
T  24348440 gatcataggctgctttcaaaaaattctcgcatatttgaggtagaga 24348395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University