View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7256_low_6 (Length: 364)
Name: NF7256_low_6
Description: NF7256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7256_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 350
Target Start/End: Original strand, 34220072 - 34220407
Alignment:
| Q |
14 |
acctgtgttaagcttcaatcgattgagagtgttaacagaatgatcagaggcttagtatgcatgtttggtatcatggcatcgttgagtttgtcaaaatcat |
113 |
Q |
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| T |
34220072 |
acctgtgttaagcttcaatcgattgagagtgttaacagaatgatcagaggcttagtatgcatgtttggtatcatggcatcgttgagtttgtcaaaatcat |
34220171 |
T |
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| Q |
114 |
agcgagtaaaagctatgtaggtagctcacccaccatgattccaaagcacttaaatattttggtgcatggcattaaacagtattttttatgaatcagcata |
213 |
Q |
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| T |
34220172 |
agcgagtaaaagctatgtaggtggctcacccaccatgattccaaagcacttaaatattttggtgcatggcattaaacagta-tttttatgaatcagcata |
34220270 |
T |
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| Q |
214 |
tttattaaacaacacgtatcatacaagacgtacgataggggacaaagacaaaactgtacaaggggcctgaatttgcggtaaccccaaaaccaaacctaaa |
313 |
Q |
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| T |
34220271 |
tttattaaacaaccggtatcatacaagacgtacgataggggacaaagacaaaactgtacaaggggcctgaatttgcggtaaccccaaaaccaaacctaaa |
34220370 |
T |
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| Q |
314 |
tctactgtcatgacagcagcactgccgatgccaacac |
350 |
Q |
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| T |
34220371 |
tctactgtcatgacagcagcactgccgatgccaacac |
34220407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 34208941 - 34208994
Alignment:
| Q |
14 |
acctgtgttaagcttcaatcgattgagagtgttaacagaatgatcagaggctta |
67 |
Q |
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| T |
34208941 |
acctgtgtttaggtttaatccattgagagtgataatagaatgatcagaggctta |
34208994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 230 - 349
Target Start/End: Original strand, 44253879 - 44253996
Alignment:
| Q |
230 |
tatcatacaagacgtacgataggggacaaagacaaaactgtacaaggggcctgaatttgcggtaaccccaaaaccaaacctaaatctactgtcatgacag |
329 |
Q |
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||||||||||| | | ||||||||||||||||| |||||| |||| ||||| ||||||||||| ||| |||| |||||| || ||||||||||||||| |
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| T |
44253879 |
tatcatacaaggcatgcgataggggacaaagacgaaactgaacaaagggcccgaatttgcggt--cccaaaaatcaaaccaaatactactgtcatgacag |
44253976 |
T |
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| Q |
330 |
cagcactgccgatgccaaca |
349 |
Q |
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| T |
44253977 |
cagcactgccgtagccaaca |
44253996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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