View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7257_high_1 (Length: 867)
Name: NF7257_high_1
Description: NF7257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7257_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 750; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 750; E-Value: 0
Query Start/End: Original strand, 8 - 848
Target Start/End: Original strand, 34964201 - 34965042
Alignment:
| Q |
8 |
ttggtggtcctaaatatacagaatccttttcattactgaactctaaactttcagacctgataacatcaactcttttcctcaataataagtacttaaacct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34964201 |
ttggtggtcctaaatatacagaatccttttcattactgaactctaaactttcagacctgataacatcaactcttttcctcaataataagtacttaaacct |
34964300 |
T |
|
| Q |
108 |
cattattacaacattttaggtctaataataaatccttcagattatatgttaaaataactgtataatgaaaattttcttaatggaattggacattgctaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34964301 |
cattattacaacattttaggtctaataataaatccttcagattatatgttaaaataactgtataatgaaaattttcttaatggaattggacattgctaaa |
34964400 |
T |
|
| Q |
208 |
tattcacatttttgcctaatattttttnnnnnnnnnnnnnnnnntttgttgtttgaacattatgaaaaacaactaatatctacctgttgcttacctacta |
307 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34964401 |
tattcacatttttgcctaatattttttaaaaatcaaacaagaaatttgttgtttgaacattatgaaaaacaactaatatctacctgtcgcttacctacta |
34964500 |
T |
|
| Q |
308 |
ttaccgaatttgatggtatcctgctccctaagttcataataccgttgaggttcaatgggactatcctgcaaaaacaaagtatcagataatcaataatgac |
407 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34964501 |
ttaccgaattcgatggtatcctgctccctaagttcataataccgttgaggttcaatgggactatcctgcaaaaacaaagtatcagataatcaataatgac |
34964600 |
T |
|
| Q |
408 |
cactcacattaacgaatgttttgtttgtgcttccaaggtccattatgtaaggtctattgcagatcacaaagatgttagggttttacatgcagaaattttt |
507 |
Q |
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| T |
34964601 |
cactcacattaacgaatgttttgtttgtgcttccaaggtccattatgtaaggtctattgcagatcacaaagatgttagggttttacatgcagaaattttt |
34964700 |
T |
|
| Q |
508 |
caacttgcctaatgagaataaatataataaaatcaatccgtgtgaaaaccttaaacaccaacaaacaaagaaacccccatggagtcggtaaattaaagaa |
607 |
Q |
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| T |
34964701 |
caacttgcctaatgagaataaatataataaaatcaatccgtgtgaaaaccttaaacaccaacaaacaaagaaacccccatggagtcggtaaattaaagaa |
34964800 |
T |
|
| Q |
608 |
ataccgaaattgaataacagcatgttgcttgctgcaagatggatgatctgttgggatatcagcaacccttctttcccttccaaaaaggtaacaactttgg |
707 |
Q |
| |
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| T |
34964801 |
ataccggaattgaataacagcatgttgcttgctgcaagatggatgatctgttgggatatcagcaacccttctttcccttccaaaaaggtaacaactttgg |
34964900 |
T |
|
| Q |
708 |
cgatgtatatatagaggctctgtcaatcatatacatttcttttagaaaaatggaggttgtttataatatt-nnnnnnntgaatatgttactcttaagcag |
806 |
Q |
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| T |
34964901 |
cgatgtatatatagaggctctgtcaatcatatacatttcttttagaaaaatggaggttgtttataatattaaaaaaaatgaatatgttactcttaagcag |
34965000 |
T |
|
| Q |
807 |
aagctataaagacttaccattcaacatttcaccagtcttgaa |
848 |
Q |
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| T |
34965001 |
aagctataaagacttaccattcaacatttcaccagtcttgaa |
34965042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 9e-88; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 547 - 759
Target Start/End: Original strand, 18422453 - 18422665
Alignment:
| Q |
547 |
gtgtgaaaaccttaaacaccaacaaacaaagaaacccccatggagtcggtaaattaaagaaataccgaaattgaataacagcatgttgcttgctgcaaga |
646 |
Q |
| |
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|||||||||| | |||||||||||||||||||||| |||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18422453 |
gtgtgaaaacttaaaacaccaacaaacaaagaaactcccatggagtcgttaaattagagaaataccggaattgaataacagcatgttgcttgctgcaaga |
18422552 |
T |
|
| Q |
647 |
tggatgatctgttgggatatcagcaacccttctttcccttccaaaaaggtaacaactttggcgatgtatatatagaggctctgtcaatcatatacatttc |
746 |
Q |
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| T |
18422553 |
aggatgatctgttgggacatcagcaacccttctttctcttccaaaaaggtaacaactttggcgatgtatatataggggctctgtcaatcatatacattac |
18422652 |
T |
|
| Q |
747 |
ttttagaaaaatg |
759 |
Q |
| |
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|||||| |||||| |
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| T |
18422653 |
ttttagcaaaatg |
18422665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 20 - 404
Target Start/End: Original strand, 18421745 - 18422127
Alignment:
| Q |
20 |
aatatacagaatccttttcattactgaactctaaactttcagacctgataacatcaa-ctcttttcctcaataataagtacttaaacctcattattacaa |
118 |
Q |
| |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| || || ||||| |
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| T |
18421745 |
aatatacagaatcctttttattactgaacaaaaaactttcagacctgataacatcaaactcttttcctcaatc-taagtacttaaggctt-ttgctacaa |
18421842 |
T |
|
| Q |
119 |
cattttaggtctaataataaatccttcagattatatgttaaaataactgtataatgaaaattttcttaatggaattggacattgctaaatattcacattt |
218 |
Q |
| |
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||| |||||||||||||||||| |||||| |||||| | |||| || |||||||||| |||| | |||||||||||| || | ||||||||||||||| |
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| T |
18421843 |
catcttaggtctaataataaatgcttcaggttatatatcaaaacaataatataatgaaatttttttaaatggaattggaaatcgttaaatattcacattt |
18421942 |
T |
|
| Q |
219 |
ttgcctaatattttttnnnnnnnnnnnnnnnnntttgttgtttgaacattatgaaaaacaactaatatctacctgttgcttacctactattaccgaattt |
318 |
Q |
| |
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|| |||||| |||||| | | ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||| |
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| T |
18421943 |
ttacctaat-tttttttcaaatcaaataagaaatatattgtttgaacattatgaaaaacaactaatatatacttgtcacttacctactattaccaaattt |
18422041 |
T |
|
| Q |
319 |
gatggtatcctgctccctaagttcataataccgttgaggttcaatgggactatcctgcaaaaacaaagtatcagataatcaataat |
404 |
Q |
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| T |
18422042 |
aatggtgtcctgctccctaagttcataataccgttgaggttcaatgggactatcctgcaaaaacaaagtatcagatagccaataat |
18422127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 402 - 502
Target Start/End: Original strand, 18422209 - 18422309
Alignment:
| Q |
402 |
aatgaccactcacattaacgaatgttttgtttgtgcttccaaggtccattatgtaaggtctattgcagatcacaaagatgttagggttttacatgcagaa |
501 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18422209 |
aatgaccactcacattaacgaatgttttgtttgtgcttccgaggtccattatgtaaggcctattgcagatcaaaaagatgttagggttttacatgcagaa |
18422308 |
T |
|
| Q |
502 |
a |
502 |
Q |
| |
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| |
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| T |
18422309 |
a |
18422309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 805 - 848
Target Start/End: Original strand, 18423135 - 18423178
Alignment:
| Q |
805 |
agaagctataaagacttaccattcaacatttcaccagtcttgaa |
848 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
18423135 |
agaagccataaagatttaccattcaacatttcaccagtcttgaa |
18423178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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