View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7257_high_10 (Length: 493)
Name: NF7257_high_10
Description: NF7257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7257_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 37347277 - 37346825
Alignment:
| Q |
18 |
acatcatacaaaatacttgttatatcttctgttggactatcctgcaaccaaagagttttataaacaaattcacttttgaaatattcaggacagacaaacc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37347277 |
acatcatacaaaatacttgttatatcttctgttggactatcctgcaaccaaagagttttatagacaaattcacttttgaaatattcaggacagacaaacc |
37347178 |
T |
|
| Q |
118 |
caacacaattaagcacgtgagtaatcccattctttcttaaaacctcatgattcttcgccactgtgtcgcttcctaggtaaacatgttcagcgattctgga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37347177 |
caacacaattaagcacgtgagtaatcccattctttcttaaaacctcatgattcttcgccactgtgtcgcttcctaggtaaacatgttcagcgattctgga |
37347078 |
T |
|
| Q |
218 |
acattctttgtcatagaaagctaacctgtctcttgtgaactgaaactctgaaccagtgattgaacctcttcctcttggtgtctctggccaaacaccgaga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37347077 |
acattctttgtcatagaaagctaacctgtctcttgtgaactgaaactctgaaccagtgattgaacctcttcctcttggtgtctctggccaaacaccgaga |
37346978 |
T |
|
| Q |
318 |
tcgtcagatccagcacttggccattctccaatgctgcgtttgttgatggaaagaggacgaagcggtggaagcaacgatcgttgtttgtttttcaccgccg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37346977 |
tcgtcagatccagcacttggccattctccaatgctgcgtttgttgatggaaagaggacgaagcggtggaagcaacgatcgttgtttgtttttcaccgccg |
37346878 |
T |
|
| Q |
418 |
ccgacggtgttggcggccttctgtttgaaggtgaacagtctgtccatgaaact |
470 |
Q |
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| T |
37346877 |
ccgacggtgttggcggccttctgtttgaaggtgaacagtctgtccatgaaact |
37346825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 39220106 - 39219862
Alignment:
| Q |
18 |
acatcatacaaaatacttgttatatcttctgttggactatcctgcaaccaaagagttttataaacaaattcacttttgaaatattcaggacagacaaacc |
117 |
Q |
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|||||||| | |||||||||||||||||| |||||||| |||||||||||||| ||||| || |||| |||||||||||||| || ||||| ||||| | |
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| T |
39220106 |
acatcatagagaatacttgttatatcttcagttggactgtcctgcaaccaaagtgttttgtactcaaaatcacttttgaaatactcgggacaaacaaaac |
39220007 |
T |
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| Q |
118 |
caacacaattaagcacgtgagtaatcccattctttcttaaaacctcatgattcttcgccactgtgtcgcttcctaggtaaacatgttcagcgattctgga |
217 |
Q |
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| T |
39220006 |
caacacagttaagcacatgtgttattcctttttctctgagaagttcatggtttttggccactgtgtcacttcccaagtaaatatgttcagcaattcttga |
39219907 |
T |
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| Q |
218 |
acattctttgtcatagaaagctaacctgtctcttgtgaactgaaa |
262 |
Q |
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| T |
39219906 |
acactctttgtcaaagaaagctaatttatctcttttgaactgaaa |
39219862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 373
Target Start/End: Complemental strand, 39219809 - 39219739
Alignment:
| Q |
303 |
ggccaaacaccgagatcgtcagatccagcacttggccattctccaatgctgcgtttgttgatggaaagagg |
373 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||| ||| ||| ||||| ||||| |||||||| |
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| T |
39219809 |
ggccaaacaccaagatcatcagatccagcacttggccattcttcaacgctacgtttattgattgaaagagg |
39219739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 406
Target Start/End: Complemental strand, 48621407 - 48621353
Alignment:
| Q |
352 |
tgcgtttgttgatggaaagaggacgaagcggtggaagcaacgatcgttgtttgtt |
406 |
Q |
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| T |
48621407 |
tgcgtttgttgatggaaagaggacgaagcagtgaaagcaatgatcgaggtttgtt |
48621353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 7599227 - 7599096
Alignment:
| Q |
18 |
acatcatacaaaatacttgttatatcttctgttggactatcctgcaaccaaagagttttataaacaaattcacttttgaaatattcaggacagacaaacc |
117 |
Q |
| |
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||||||||||| ||||| || ||||| || | ||||| || || ||||| | ||| |||| ||||| |||| ||| ||||| |||||||| ||||| | |
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| T |
7599227 |
acatcatacaatatactagtaatatcctcactaggactgtcttgtaaccacaaagtcctatacacaaaatcacctttaaaatactcaggacacacaaaac |
7599128 |
T |
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| Q |
118 |
caacacaattaagcacgtgagtaatcccattc |
149 |
Q |
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|||||||||| | || ||||||||||||||| |
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| T |
7599127 |
caacacaattcaaaacatgagtaatcccattc |
7599096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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