View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7257_high_11 (Length: 483)
Name: NF7257_high_11
Description: NF7257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7257_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 24 - 469
Target Start/End: Complemental strand, 2532350 - 2531894
Alignment:
| Q |
24 |
cacccaacaaaacgatcttccaaattataatagttgtggatctacaaaatatataaatgaaccatcacgaacttgcatatattaattattaatttaagtt |
123 |
Q |
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| T |
2532350 |
cacctaacaaaaagatcttccaaattataatagttgtggatctacaaaatatataaatgaaccatcacgaacttgcatatattaatt-------taagtt |
2532258 |
T |
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| Q |
124 |
aaggagtatgac--gtgtatgatcgatatatatgagtgaaa--------------------aattaattcatgcattgtatagattattatatagataga |
201 |
Q |
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| T |
2532257 |
aaggagtatgacacgtgtatgatcgatatatatgagtgaaacaaatgatgtatactatagcaattaattcatgcattgtatagattattatatagat--- |
2532161 |
T |
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| Q |
202 |
tggaatgaccttatgaattaagggatatggcttgtgaggatttccatatcatctcaagagatactataatagtactattgacaaacaacattgaaatggt |
301 |
Q |
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| T |
2532160 |
-ggaataaccttatgaattaagggatatggcttgtgaggatttccatatcatctcaagagatactataatagtattattgacaaacaacattgaaatggt |
2532062 |
T |
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| Q |
302 |
aggatttaataagtaatatatattaatattaatttttgagtgacgaatttaaggacatacctgtccttcgaaattatttgttgttgctggtcccttgtca |
401 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2532061 |
aggatttaataagtagtatatattaatattaatttttgagtgacgaatttaaggacatacctgtccttcgaaattatttgttgttgctggtcccttgtca |
2531962 |
T |
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| Q |
402 |
catgcatatgtaccaaaacaaataatcataaaagaaggaaaactatccccaattgttttgactcacag |
469 |
Q |
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| T |
2531961 |
catgcatatgtaccaaaacaaataatcataaaagaaggaaaactatcaccaattgttttgactcacag |
2531894 |
T |
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