View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7257_high_14 (Length: 391)

Name: NF7257_high_14
Description: NF7257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7257_high_14
NF7257_high_14
[»] chr1 (3 HSPs)
chr1 (207-346)||(26452834-26452973)
chr1 (51-210)||(26453245-26453425)
chr1 (6-56)||(26453517-26453567)


Alignment Details
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 207 - 346
Target Start/End: Complemental strand, 26452973 - 26452834
Alignment:
Q  207 aggattggagagagtaaatattagtgaacttgcatcaaaatttagcagattttttcttgaaaaaacacacatggagacagttgatttgtgtgatatatgc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452973 aggattggagagagtaaatattagtgaacttgcatcaaaatttagcagattttttcttgaaaaaacacacatggagacagttgatttgtgtgatatatgc 26452874  T
Q  307 ttactgcattgcatcgaatgatagcagactttttctttga 346  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26452873 ttactgcattgcatcgaatgatagcagactttttctttga 26452834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 51 - 210
Target Start/End: Complemental strand, 26453425 - 26453245
Alignment:
Q  51 atttagattgaattttatgtttgatattcttattgttttaatgactttcttaataatctttt---------------------attccttaacatatttc 129  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||                     |||||||||||||||||    
T  26453425 attttgattgaattttatgtttgatattcttattgttttaatggctttcttaataatcttttgcgctttccatttttttttttattccttaacatatttc 26453326  T
Q  130 aatgtttgatcttggcgaggtgaaggaatatgattggaattactgatcaagaagaagtctcaatattttcttcgatgagga 210  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453325 aatgtttgatcttggtgaggtgaaggaatatgattggaattactgatcaagaagaagtctcaatattttcttcgatgagga 26453245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 26453567 - 26453517
Alignment:
Q  6 tgttgaagaagacaatgttgtttgttttagcctctcttcaatgccatttag 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453567 tgttgaagaagacaatgttgtttgttttagcctctcttcaatgccatttag 26453517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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