View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7257_high_17 (Length: 386)
Name: NF7257_high_17
Description: NF7257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7257_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 53658005 - 53658360
Alignment:
| Q |
18 |
agatttgtctggagtnnnnnnngcccgttttttacttttggttgttgaagaaaggagcgggcttttttagttgatattgatagtatttaatctggtgtag |
117 |
Q |
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| T |
53658005 |
agatttgtctggagtaaaaaaagcccgttttttacttttggttgttgaagaaaggagcgggcttttttagttgatattgatattatt-aatctggtgtag |
53658103 |
T |
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| Q |
118 |
aattagaatctgtactgtaaaatgaatcatatttcactgtttgattgaaatctattttgagaaaaaagaaagtgtctttttctaatgggatcacggatct |
217 |
Q |
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| T |
53658104 |
aattagaatctgtactgtaaaatgaatcatatttcactgtttgattgaaatctattttgagaaaaaagaaagtgtctttttctaatgggatcacggatct |
53658203 |
T |
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| Q |
218 |
ctttccccattcctattggatggggtgccactccttttctccagctgtatctctgtatccgtgnnnnnnnnnnnngtgtaacttttccagtcaacttgtt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
53658204 |
ctttccccattcctattggatggggtgccactccttttctccagctgtatctctgtatccgtgtttttcttttttgtgtaacttttccagtcaacttgtt |
53658303 |
T |
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| Q |
318 |
tttgtcagc--gtatattatatacttcctctcctctcttctatcattttatctattt |
372 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53658304 |
tttgtcagcttatatattatatacttcctctcctcccttctatcattttatctattt |
53658360 |
T |
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