View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7257_high_20 (Length: 336)
Name: NF7257_high_20
Description: NF7257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7257_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 22 - 328
Target Start/End: Original strand, 34023065 - 34023373
Alignment:
| Q |
22 |
actgttgaggcattatctcctggccataaaggggagctttggttgcgaggaccaacaatcatgaaaggtgactaataaacttctccat--ttatgggaac |
119 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
34023065 |
actgttgaggcattatctcctggttataaaggggagctttggttgcgaggaccaacaatcatgaaaggtgattaataaacttctccatatttatgggaac |
34023164 |
T |
|
| Q |
120 |
cattgcatttgcataatgttgggcagcgaaaatgtgcactaaaaccaaagatttgctatgttcatgaagttgtaaaatgcaattatagatagagttgtga |
219 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34023165 |
cattgcatttgcataatgttaggcagtgaaaatgtgcactaaaaccaaagatttgctatgttcatgaagttgtaaaatggaattatagatagagttgtga |
34023264 |
T |
|
| Q |
220 |
aagttgcaagtaagctgacaacgagttaaataatgataatattagtggacagattcatgtattcaatgaataactctatcactttagttcattgattaga |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
34023265 |
aagttgcaagtaagctgacaacgagttaaataatgataatattagtggacagattcatgtattcaatgaataagtctatcactttagttcattaattaga |
34023364 |
T |
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| Q |
320 |
gttcatctc |
328 |
Q |
| |
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||||||||| |
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| T |
34023365 |
gttcatctc |
34023373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 28 - 328
Target Start/End: Original strand, 34030324 - 34030625
Alignment:
| Q |
28 |
gaggcattatctcctggccataaaggggagctttggttgcgaggaccaacaatcatgaaaggtgactaataaacttctccatttatgggaaccattgcat |
127 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| |
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| T |
34030324 |
gaggcattatctcctggccagaaaggggagctttggttgcgaggaccaacaatcatgaaaggtgattaataaacctctccatttatgcgaaccattgcat |
34030423 |
T |
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| Q |
128 |
ttgcataatgttgggcagcgaaaatgtgcactaaaacc-aaagatttgctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgc |
226 |
Q |
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|||||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34030424 |
ttgcataatgttaggcagtgaaaatgtgcactaaaaactaaagatttgctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgc |
34030523 |
T |
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| Q |
227 |
aagtaagctgacaacgagttaaataatgataatattagtggacagattcatgtattcaatgaataactctatcactttagttcattgattagagttcatc |
326 |
Q |
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|| || |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| |
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| T |
34030524 |
aaataggctgacaatgagttaagtaaagataatattagtggacagattcatgtattcaatgaatatgtctctcactttagttcattgattggagttcatc |
34030623 |
T |
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| Q |
327 |
tc |
328 |
Q |
| |
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|| |
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|
| T |
34030624 |
tc |
34030625 |
T |
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