View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7257_low_13 (Length: 391)
Name: NF7257_low_13
Description: NF7257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7257_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 5 - 374
Target Start/End: Complemental strand, 20817184 - 20816815
Alignment:
| Q |
5 |
tgtcgaagaatatcagctgatttcaacaccctataattaataaagttgtcgtagcaccaagaagcatcctcattgttttgcttgtaggcatgatatacat |
104 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20817184 |
tgtcgaacattatcagctgatttcaacaccctataattaataaagttgtcgtagcaccaagaagcatcctcgttgttttgcttgtaggcatgatatacat |
20817085 |
T |
|
| Q |
105 |
tcaagagtgtgagatgatctccatcaacgtgtgcaaacctagctttcgcttcatccgcagctatctgtgcctccttaggccggataaagcaattgggtac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20817084 |
tcaagagtgtgagatgatctccatcaacgtgtataaacctagctttcgcttcatccgcagctatttgtgcctccttaggccggataaagcaattgggtac |
20816985 |
T |
|
| Q |
205 |
tgacagcatcgcagaaattgacagaatctcatttgaacagttgaactcagggctaacaacaagcatctttgacatctgagggtccaatggaaactcactc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20816984 |
tgacagcatcgcagaaattgacagaatctcatttgaacagttgaactcagggctaacaacaagcatctttgacatctgagggtccaacggaaactcactc |
20816885 |
T |
|
| Q |
305 |
ataatctcacccaactttgttaaggtaccttcatcatccattgcacccaagtaattcaacacttccaaag |
374 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20816884 |
ataatcttacccaactttgttaagttaccttcatcatccattgcacccaagtaattcaacacttccaaag |
20816815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 374
Target Start/End: Original strand, 33387920 - 33388289
Alignment:
| Q |
5 |
tgtcgaagaatatcagctgatttcaacaccctataattaataaagttgtcgtagcaccaagaagcatcctcattgttttgcttgtaggcatgatatacat |
104 |
Q |
| |
|
||||||| | ||||||||||||||| | |||| | ||||| |||||| || ||||||||||| | ||||||||||||||||||||||||||| ||||| | |
|
|
| T |
33387920 |
tgtcgaacattatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgt |
33388019 |
T |
|
| Q |
105 |
tcaagagtgtgagatgatctccatcaacgtgtgcaaacctagctttcgcttcatccgcagctatctgtgcctccttaggccggataaagcaattgggtac |
204 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| ||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
33388020 |
tcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtac |
33388119 |
T |
|
| Q |
205 |
tgacagcatcgcagaaattgacagaatctcatttgaacagttgaactcagggctaacaacaagcatctttgacatctgagggtccaatggaaactcactc |
304 |
Q |
| |
|
| | ||||||||||||||| |||||||| ||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388120 |
cgctaccatcgcagaaattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactc |
33388219 |
T |
|
| Q |
305 |
ataatctcacccaactttgttaaggtaccttcatcatccattgcacccaagtaattcaacacttccaaag |
374 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
33388220 |
ataatctcacccagctttgttaagttaccttcatcatcaattgcacctaagtaattcaacacttccaaag |
33388289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 204 - 374
Target Start/End: Original strand, 38779160 - 38779330
Alignment:
| Q |
204 |
ctgacagcatcgcagaaattgacagaatctcatttgaacagttgaactcagggctaacaacaagcatctttgacatctgagggtccaatggaaactcact |
303 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38779160 |
ctgacaacatcgcagaaattgaaagaatctcattcgaacagttgaactcaggactaacaacaagcatctttgacatctgagggtccaatggaaactcact |
38779259 |
T |
|
| Q |
304 |
cataatctcacccaactttgttaaggtaccttcatcatccattgcacccaagtaattcaacacttccaaag |
374 |
Q |
| |
|
|||||||||||| | |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38779260 |
cataatctcaccaagctttgttaagttaccttcatcatccagtgcacccaagtaattcaacacttccaaag |
38779330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 38778622 - 38778749
Alignment:
| Q |
78 |
tgttttgcttgtaggcatgatatacattcaagagtgtgagatgatctccatcaacgtgtgcaaacctagctttcgcttcatccgcagctatctgtgcctc |
177 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
38778622 |
tgttttgcttgtaggcatggtatacattcaagagtgtgagatgatctccatcaatgtgtccaaacctagctttggcttcatccgcagctttttgtgcctc |
38778721 |
T |
|
| Q |
178 |
cttaggccggataaagcaattgggtact |
205 |
Q |
| |
|
| |||||||||||||||||||||||||| |
|
|
| T |
38778722 |
cctaggccggataaagcaattgggtact |
38778749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 38778443 - 38778513
Alignment:
| Q |
5 |
tgtcgaagaatatcagctgatttcaacaccctataattaataaagttgtcgtagcaccaagaagcatcctc |
75 |
Q |
| |
|
||||||| | ||||||||||||| | | |||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38778443 |
tgtcgaacattatcagctgatttaagcgccctattattaacgaagttgtcgtagcaccaagaagcatcctc |
38778513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University