View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7257_low_18 (Length: 372)
Name: NF7257_low_18
Description: NF7257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7257_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 23023294 - 23023647
Alignment:
| Q |
19 |
agcatatccatttatatctaccgacagaaggtatcttttcaccactgtgcttaaaatatt-gtgtatactgccaaaattttcagtttcttcttggaaacg |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23023294 |
agcatagccatttatatctaccgacagaaggtatcttttcagcactgtgcttaaaatatttgtgtatactgccaaaattttcagtttcttcttggaaacg |
23023393 |
T |
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| Q |
118 |
tcatgactcatgtgagatgcaaaagatgataaacaattctgttagttggatctcaacgaagtgcccaatcaataaacagtattatatcccaaatgatgac |
217 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23023394 |
tcatgactcatgtgagatgcaaaggatgataaacaatcctgttagttggatctcaacgaagtgcccaatcaataaacagtattatatcccaaatgatgtc |
23023493 |
T |
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| Q |
218 |
aatacttgcattttgaatgaggtctagaggtggatgattgtgcctgagaattcgaaccagccataatcagtaaatagaaaactaaaacaatctcgaaaag |
317 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23023494 |
aatacttgcattttaaatgaggtctagaggtggatgattgtgcctgagaattcgaaccagccataatcagtaaatagaaaactaaaacaatcgcgaaaag |
23023593 |
T |
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| Q |
318 |
ataccaaaagaggcatacaaaaattgtgatgagcggtaactatgaacaccaaac |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23023594 |
ataccaaaagaggcatacaaaaattgtgatgagcggtaactatgaacaacaaac |
23023647 |
T |
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