View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7257_low_27 (Length: 263)
Name: NF7257_low_27
Description: NF7257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7257_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 38118794 - 38119050
Alignment:
| Q |
1 |
tttcagcgtggctaacaacacaaatgctacttctagcaatggaatttatagactgaagttcaatacaactgtggatattatacttcaaaatgcaaacact |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38118794 |
tttcagtgtggctaacaacacaaatgctacttctagcaatggaatttatagactgaagttcaatacaactgtggatattatacttcaaaatgcaaacact |
38118893 |
T |
|
| Q |
101 |
atgaataaaaataatagtgagacacatccttggcatcttcatggacatgatttttgggtacttggatatggaaagggaaagtttgatgcgaacaaagacc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38118894 |
atgaataaaaataacagtgagacacatccttggcatcttcatggacatgatttttgggtacttggatatggaaagggaaagtttgatgcgaacaaagacc |
38118993 |
T |
|
| Q |
201 |
caaaaaattataatttggtgaaccccattatgaagaatactgtgccagtgcactcat |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38118994 |
caaaaaattataatttggtgaaccccattatgaagaatactgtgccagtgcactcat |
38119050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University